PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74301-74350 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | * | 97.8332 | 96.3733 | 99.3380 | 86.1787 | 2551 | 96 | 2551 | 17 | 10 | 58.8235 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | het | 97.1755 | 95.2994 | 99.1269 | 86.3845 | 1703 | 84 | 1703 | 15 | 8 | 53.3333 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.4545 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.2958 | 98.8318 | 99.7642 | 85.6708 | 846 | 10 | 846 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | * | 98.0939 | 98.3402 | 97.8488 | 87.6784 | 4503 | 76 | 4503 | 99 | 3 | 3.0303 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | het | 97.3715 | 97.9784 | 96.7720 | 88.9838 | 2908 | 60 | 2908 | 97 | 2 | 2.0619 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.4375 | 99.0044 | 99.8745 | 84.1493 | 1591 | 16 | 1591 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | * | 98.0065 | 97.5066 | 98.5115 | 87.3534 | 2581 | 66 | 2581 | 39 | 3 | 7.6923 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | het | 97.2943 | 96.5865 | 98.0125 | 88.5090 | 1726 | 61 | 1726 | 35 | 1 | 2.8571 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | homalt | 99.4740 | 99.4159 | 99.5322 | 84.0366 | 851 | 5 | 851 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | * | 98.0609 | 98.0338 | 98.0881 | 87.5648 | 7080 | 142 | 7080 | 138 | 6 | 4.3478 | |
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | het | 97.3427 | 97.4553 | 97.2304 | 88.8130 | 4634 | 121 | 4634 | 132 | 3 | 2.2727 | |
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | homalt | 99.4502 | 99.1474 | 99.7549 | 84.1101 | 2442 | 21 | 2442 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 92.9577 | 93.3962 | 92.5234 | 94.8483 | 99 | 7 | 99 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | het | 90.1639 | 91.6667 | 88.7097 | 95.3662 | 55 | 5 | 55 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5517 | 95.4545 | 97.6744 | 93.4947 | 42 | 2 | 42 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | * | 72.7273 | 57.1429 | 100.0000 | 97.5155 | 4 | 3 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.9167 | 2 | 2 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.4286 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | * | 96.0396 | 95.4098 | 96.6777 | 99.6478 | 291 | 14 | 291 | 10 | 5 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | het | 95.4667 | 94.2105 | 96.7568 | 95.6957 | 179 | 11 | 179 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 97.7564 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7596 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.5962 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.6378 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.0149 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | SNP | * | map_l250_m1_e0 | * | 98.1678 | 97.1891 | 99.1664 | 85.6613 | 7019 | 203 | 7019 | 59 | 29 | 49.1525 | |
| jli-custom | SNP | * | map_l250_m1_e0 | het | 97.5495 | 96.2776 | 98.8555 | 86.3033 | 4578 | 177 | 4578 | 53 | 23 | 43.3962 | |
| jli-custom | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.8367 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | SNP | * | map_l250_m1_e0 | homalt | 99.3477 | 98.9444 | 99.7544 | 84.2418 | 2437 | 26 | 2437 | 6 | 6 | 100.0000 | |
| jli-custom | SNP | tv | map_l250_m1_e0 | * | 97.9966 | 97.0155 | 98.9977 | 85.0101 | 2568 | 79 | 2568 | 26 | 11 | 42.3077 | |
| jli-custom | SNP | tv | map_l250_m1_e0 | het | 97.3617 | 96.0269 | 98.7342 | 85.3704 | 1716 | 71 | 1716 | 22 | 7 | 31.8182 | |
| jli-custom | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.8367 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l250_m1_e0 | homalt | 99.2974 | 99.0654 | 99.5305 | 84.1518 | 848 | 8 | 848 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||