PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74201-74250 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 92.8571 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.2830 | 95.2830 | 95.2830 | 95.7275 | 101 | 5 | 101 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.2215 | 56 | 4 | 56 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.1481 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.2602 | 43 | 1 | 43 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.6355 | 18 | 0 | 18 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.6867 | 11 | 0 | 11 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3636 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6216 | 5 | 0 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 66.2037 | 61.1111 | 72.2222 | 98.0456 | 11 | 7 | 13 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 67.3077 | 63.6364 | 71.4286 | 98.2673 | 7 | 4 | 10 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 52.1739 | 40.0000 | 75.0000 | 96.4602 | 2 | 3 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 52.1739 | 42.8571 | 66.6667 | 97.6654 | 3 | 4 | 8 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 53.3333 | 50.0000 | 57.1429 | 98.2544 | 2 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 47.0588 | 33.3333 | 80.0000 | 93.9759 | 1 | 2 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 96.1290 | 1 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.4955 | 1 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 96.7742 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 70.4907 | 56.6038 | 93.4066 | 98.0769 | 60 | 46 | 85 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 77.2881 | 66.6667 | 91.9355 | 98.3812 | 40 | 20 | 57 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7654 | 1 | 1 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 59.6512 | 43.1818 | 96.4286 | 96.5895 | 19 | 25 | 27 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | map_l250_m1_e0 | * | 76.9830 | 65.9992 | 92.3526 | 95.3560 | 1747 | 900 | 1739 | 144 | 117 | 81.2500 | |
| qzeng-custom | SNP | tv | map_l250_m1_e0 | het | 77.8994 | 68.7185 | 89.9116 | 96.1828 | 1228 | 559 | 1221 | 137 | 110 | 80.2920 | |
| qzeng-custom | SNP | tv | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m1_e0 | homalt | 75.0174 | 60.5140 | 98.6641 | 89.2181 | 518 | 338 | 517 | 7 | 7 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | * | 73.1661 | 60.6683 | 92.1490 | 95.6157 | 2778 | 1801 | 2770 | 236 | 199 | 84.3220 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | het | 73.3752 | 62.4326 | 88.9688 | 96.5528 | 1853 | 1115 | 1855 | 230 | 193 | 83.9130 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 98.5294 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m1_e0 | homalt | 72.8401 | 57.4984 | 99.3478 | 88.5158 | 924 | 683 | 914 | 6 | 6 | 100.0000 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | * | 74.6091 | 62.6419 | 92.2286 | 95.4856 | 4524 | 2698 | 4486 | 378 | 314 | 83.0688 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | het | 75.1142 | 64.7950 | 89.3431 | 96.3888 | 3081 | 1674 | 3060 | 365 | 301 | 82.4658 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l250_m1_e0 | homalt | 73.6061 | 58.5465 | 99.0960 | 88.7560 | 1442 | 1021 | 1425 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 93.5484 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1698 | 97.1698 | 97.1698 | 95.7819 | 103 | 3 | 103 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | het | 97.4790 | 96.6667 | 98.3051 | 96.2753 | 58 | 2 | 58 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4000 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.4030 | 43 | 1 | 43 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||