PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73801-73850 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | * | 58.8235 | 71.4286 | 50.0000 | 96.1686 | 5 | 2 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | het | 61.5385 | 100.0000 | 44.4444 | 96.2185 | 4 | 0 | 4 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.6522 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | map_l250_m1_e0 | * | 90.1392 | 97.5353 | 83.7857 | 91.6472 | 7044 | 178 | 6976 | 1350 | 42 | 3.1111 | |
| gduggal-bwavard | SNP | * | map_l250_m1_e0 | het | 86.5001 | 97.8128 | 77.5328 | 92.6635 | 4651 | 104 | 4607 | 1335 | 32 | 2.3970 | |
| gduggal-snapfb | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l250_m1_e0 | homalt | 98.2519 | 97.1579 | 99.3708 | 87.2425 | 2393 | 70 | 2369 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | * | 90.9201 | 97.4012 | 85.2478 | 91.8224 | 4460 | 119 | 4438 | 768 | 26 | 3.3854 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | het | 87.4417 | 97.6415 | 79.1712 | 92.9128 | 2898 | 70 | 2885 | 759 | 20 | 2.6351 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | homalt | 98.2992 | 97.1998 | 99.4238 | 87.2438 | 1562 | 45 | 1553 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | * | 88.5182 | 97.6199 | 80.9689 | 91.3881 | 2584 | 63 | 2574 | 605 | 16 | 2.6446 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | het | 84.6644 | 98.0974 | 74.4672 | 92.2745 | 1753 | 34 | 1747 | 599 | 12 | 2.0033 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | homalt | 98.1672 | 97.0794 | 99.2797 | 87.2766 | 831 | 25 | 827 | 6 | 4 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 97.7778 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | * | 94.6860 | 92.4528 | 97.0297 | 95.6893 | 98 | 8 | 98 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | het | 92.0354 | 86.6667 | 98.1132 | 96.1398 | 52 | 8 | 52 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.7846 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | * | 97.6471 | 97.0760 | 98.2249 | 95.1297 | 166 | 5 | 166 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | het | 96.8326 | 96.3964 | 97.2727 | 94.8526 | 107 | 4 | 107 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.2973 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4726 | 57 | 0 | 57 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 96.2306 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | het | 96.0000 | 100.0000 | 92.3077 | 94.6281 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.9592 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 95.6522 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.5000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.1569 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | * | 97.9068 | 97.5541 | 98.2622 | 89.4468 | 4467 | 112 | 4467 | 79 | 24 | 30.3797 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | het | 97.3192 | 97.2372 | 97.4013 | 90.0480 | 2886 | 82 | 2886 | 77 | 22 | 28.5714 | |