PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73751-73800 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.5000 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 96.5261 | 56 | 1 | 56 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | * | 94.3297 | 93.7323 | 94.9347 | 89.2465 | 4292 | 287 | 4292 | 229 | 122 | 53.2751 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | het | 93.8477 | 95.0809 | 92.6461 | 86.7956 | 2822 | 146 | 2822 | 224 | 118 | 52.6786 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | homalt | 95.2567 | 91.2259 | 99.6601 | 92.2128 | 1466 | 141 | 1466 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | * | 94.5000 | 94.2121 | 94.7896 | 89.4714 | 6804 | 418 | 6804 | 374 | 175 | 46.7914 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | het | 94.0213 | 95.4154 | 92.6675 | 86.7306 | 4537 | 218 | 4537 | 359 | 166 | 46.2396 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | homalt | 95.4651 | 91.8798 | 99.3415 | 92.6863 | 2263 | 200 | 2263 | 15 | 9 | 60.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | * | 61.5385 | 44.4444 | 100.0000 | 99.0730 | 8 | 10 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | het | 62.5000 | 45.4545 | 100.0000 | 99.2690 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7805 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 97.9381 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | * | 97.3075 | 96.9399 | 97.6780 | 89.1719 | 2566 | 81 | 2566 | 61 | 14 | 22.9508 | |
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | het | 96.5517 | 96.3626 | 96.7416 | 89.4306 | 1722 | 65 | 1722 | 58 | 11 | 18.9655 | |
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | homalt | 98.8817 | 98.1308 | 99.6441 | 88.5431 | 840 | 16 | 840 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | * | 58.6777 | 41.5205 | 100.0000 | 98.7278 | 71 | 100 | 71 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | het | 57.6923 | 40.5405 | 100.0000 | 98.9752 | 45 | 66 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.6139 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | homalt | 60.9756 | 43.8596 | 100.0000 | 97.3147 | 25 | 32 | 25 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | * | 56.4706 | 39.3443 | 100.0000 | 98.8721 | 120 | 185 | 120 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | het | 58.7361 | 41.5789 | 100.0000 | 99.0493 | 79 | 111 | 79 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.4937 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | homalt | 52.7027 | 35.7798 | 100.0000 | 97.9835 | 39 | 70 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 50.0000 | 100.0000 | 99.1632 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.4872 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | * | 91.6667 | 90.1639 | 93.2203 | 95.5752 | 275 | 30 | 275 | 20 | 6 | 30.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | het | 89.8396 | 88.4211 | 91.3043 | 94.3696 | 168 | 22 | 168 | 16 | 3 | 18.7500 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.0392 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | homalt | 95.8525 | 95.4128 | 96.2963 | 96.6728 | 104 | 5 | 104 | 4 | 3 | 75.0000 | |