PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73451-73500 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m0_e0 | * | 66.6667 | 50.0000 | 100.0000 | 98.1250 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 96.4912 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 99.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 98.2642 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | het | 93.3333 | 93.3333 | 93.3333 | 97.4315 | 14 | 1 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 98.8473 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | * | 93.6877 | 92.6277 | 94.7722 | 93.6399 | 1269 | 101 | 1269 | 70 | 31 | 44.2857 | |
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | het | 92.8266 | 92.8266 | 92.8266 | 90.7653 | 867 | 67 | 867 | 67 | 29 | 43.2836 | |
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | homalt | 95.6005 | 92.2018 | 99.2593 | 96.2789 | 402 | 34 | 402 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | * | 93.7882 | 93.3489 | 94.2317 | 93.9033 | 1993 | 142 | 1993 | 122 | 43 | 35.2459 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | het | 93.1615 | 93.6255 | 92.7022 | 90.7097 | 1410 | 96 | 1410 | 111 | 38 | 34.2342 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | homalt | 95.3393 | 92.6868 | 98.1481 | 96.7438 | 583 | 46 | 583 | 11 | 5 | 45.4545 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | * | 91.4894 | 93.4783 | 89.5833 | 97.2650 | 43 | 3 | 43 | 5 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | het | 88.2353 | 90.9091 | 85.7143 | 95.6950 | 30 | 3 | 30 | 5 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5635 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | * | 96.6469 | 96.0784 | 97.2222 | 93.6095 | 735 | 30 | 735 | 21 | 6 | 28.5714 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | het | 96.0492 | 95.6294 | 96.4727 | 93.2955 | 547 | 25 | 547 | 20 | 5 | 25.0000 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | homalt | 98.4293 | 97.4093 | 99.4709 | 94.3430 | 188 | 5 | 188 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | C16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | * | 47.0588 | 30.7692 | 100.0000 | 99.5667 | 24 | 54 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | het | 50.7042 | 33.9623 | 100.0000 | 99.5919 | 18 | 35 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | homalt | 38.7097 | 24.0000 | 100.0000 | 99.3555 | 6 | 19 | 6 | 0 | 0 | ||