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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7201-7250 / 86044 show all
ckim-isaacSNP*HG002compoundhet*
87.4314
80.5166
95.6453
38.0766
20791503121327971803
82.6982
ckim-isaacSNP*HG002compoundhethet
87.1652
78.2691
98.3428
43.2349
1109730811163119636
18.3673
ckim-isaacSNP*HG002compoundhethetalt
96.5807
93.3875
100.0000
18.9325
8055780500
ckim-isaacSNP*HG002compoundhethomalt
90.1933
82.4430
99.5521
29.8507
8889189388904035
87.5000
ckim-vqsrINDEL*HG002compoundhet*
93.9622
92.7503
95.2061
62.6940
2778821722766513931381
99.1385
ckim-vqsrINDEL*HG002compoundhethet
93.3882
98.2169
89.0120
79.6916
4021733775466457
98.0687
ckim-vqsrINDEL*HG002compoundhethetalt
95.5428
91.6720
99.7550
50.3140
230832097232065757
100.0000
ckim-vqsrINDEL*HG002compoundhethomalt
61.0714
99.7085
44.0154
84.7468
6842684870867
99.6552
ckim-isaacINDELI6_15HG002compoundhet*
78.6319
69.8154
89.9971
31.6672
612726496127681634
93.0984
ckim-isaacINDELI6_15HG002compoundhethet
32.8633
69.2308
21.5453
64.8197
14464145528493
93.3712
ckim-isaacINDELI6_15HG002compoundhethetalt
82.1207
69.9426
99.4336
21.1377
5971256659693423
67.6471
ckim-isaacINDELI6_15HG002compoundhethomalt
15.7021
38.7097
9.8485
69.8630
121913119118
99.1597
ckim-isaacSNPtvHG002compoundhet*
85.3990
78.0567
94.2659
45.8825
696519587217439382
87.0159
ckim-isaacSNPtvHG002compoundhethet
84.5719
74.3206
98.1038
53.1755
3473120037257217
23.6111
ckim-isaacSNPtvHG002compoundhethetalt
96.5807
93.3875
100.0000
18.9325
8055780500
ckim-isaacSNPtvHG002compoundhethomalt
88.3010
79.3093
99.5923
36.8889
268770126871111
100.0000
ckim-isaacINDELI16_PLUSHG002compoundhet*
61.2497
48.1568
84.1205
44.7593
103211111033195178
91.2821
ckim-isaacINDELI16_PLUSHG002compoundhethet
19.1083
31.9149
13.6364
72.1014
153221133118
88.7218
ckim-isaacINDELI16_PLUSHG002compoundhethetalt
65.1901
48.5428
99.2149
33.3115
10161077101187
87.5000
ckim-isaacINDELI16_PLUSHG002compoundhethomalt
3.4483
33.3333
1.8182
61.5385
1215453
98.1481
ckim-isaacINDELI1_5HG002compoundhet*
86.4991
81.9764
91.5499
51.1004
10129222710130935794
84.9198
ckim-isaacINDELI1_5HG002compoundhethet
60.5332
77.1765
49.7948
74.1605
656194728734607
82.6975
ckim-isaacINDELI1_5HG002compoundhethetalt
90.1858
82.6071
99.2955
37.7647
9233194491626555
84.6154
ckim-isaacINDELI1_5HG002compoundhethomalt
68.0851
72.9483
63.8298
82.4627
24089240136132
97.0588
ckim-vqsrINDELC16_PLUSHG002compoundhet*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSHG002compoundhethet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSHG002compoundhethetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSHG002compoundhethomalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtiHG002compoundhet*
88.7627
82.1776
96.4952
32.6037
14363311514647532421
79.1353
ckim-isaacSNPtiHG002compoundhethet
88.4015
80.2104
98.4558
36.9008
76241881790612419
15.3226
ckim-isaacSNPtiHG002compoundhethetalt
96.2366
92.7461
100.0000
18.6364
5374253700
ckim-isaacSNPtiHG002compoundhethomalt
91.0386
83.8788
99.5347
26.2921
6202119262032924
82.7586
eyeh-varpipeINDELD1_5HG002compoundhet*
54.4680
50.0613
59.7255
65.1711
61256110609241084053
98.6611
eyeh-varpipeINDELD1_5HG002compoundhethet
84.7249
91.5509
78.8462
70.2988
158214653314397
67.8322
eyeh-varpipeINDELD1_5HG002compoundhethetalt
58.5449
41.7091
98.1717
64.4031
4261595553169995
95.9596
eyeh-varpipeINDELD1_5HG002compoundhethomalt
11.1474
96.9072
5.9138
65.1721
282924338663861
99.8707
eyeh-varpipeINDELI1_5HG002compoundhet*
54.5656
48.0495
63.1261
63.8199
59376419596134823440
98.7938
eyeh-varpipeINDELI1_5HG002compoundhethet
74.0633
83.6471
66.4499
67.5390
711139511258225
87.2093
eyeh-varpipeINDELI1_5HG002compoundhethetalt
60.8513
43.9832
98.7067
61.4827
4916626151906865
95.5882
eyeh-varpipeINDELI1_5HG002compoundhethomalt
14.0848
94.2249
7.6112
66.1111
3101926031563150
99.8099
eyeh-varpipeINDELD16_PLUSHG002compoundhet*
28.2801
22.7680
37.3134
28.0307
5331808525882881
99.8866
eyeh-varpipeINDELD16_PLUSHG002compoundhethet
53.8274
51.6049
56.2500
59.7990
209196453535
100.0000
eyeh-varpipeINDELD16_PLUSHG002compoundhethetalt
28.4846
16.7531
95.0298
30.9066
32316054782525
100.0000
eyeh-varpipeINDELD16_PLUSHG002compoundhethomalt
0.4762
12.5000
0.2427
19.8444
172822821
99.8783
eyeh-varpipeINDELI16_PLUSHG002compoundhet*
16.3932
10.4060
38.6054
37.9092
2231920227361360
99.7230
eyeh-varpipeINDELI16_PLUSHG002compoundhethet
2.3810
4.2553
1.6529
50.2058
2452119119
100.0000
eyeh-varpipeINDELI16_PLUSHG002compoundhethetalt
18.8882
10.4634
96.9432
40.6736
219187422277
100.0000
eyeh-varpipeINDELI16_PLUSHG002compoundhethomalt
2.4742
66.6667
1.2605
25.1572
213235234
99.5745
eyeh-varpipeINDELC6_15HG002compoundhet*
0.0000
0.0000
65.6489
85.9893
00864539
86.6667
eyeh-varpipeINDELC6_15HG002compoundhethet
0.0000
0.0000
97.7444
00032
66.6667