PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
71001-71050 / 86044 show all | |||||||||||||||
rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.1176 | 88.8889 | 100.0000 | 94.2238 | 16 | 2 | 16 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.7742 | 93.7500 | 100.0000 | 91.8919 | 15 | 1 | 15 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | * | 99.1367 | 98.9191 | 99.3552 | 75.1649 | 20499 | 224 | 20495 | 133 | 93 | 69.9248 | |
rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | het | 98.9954 | 98.8167 | 99.1746 | 76.0502 | 12861 | 154 | 12857 | 107 | 68 | 63.5514 | |
rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | hetalt | 93.7500 | 100.0000 | 88.2353 | 87.5912 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | homalt | 99.3872 | 99.0901 | 99.6862 | 73.4415 | 7623 | 70 | 7623 | 24 | 23 | 95.8333 | |
rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2028 | 98.2005 | 98.2051 | 88.8460 | 764 | 14 | 766 | 14 | 7 | 50.0000 | |
rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.9860 | 97.7011 | 98.2726 | 88.3079 | 510 | 12 | 512 | 9 | 2 | 22.2222 | |
rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 98.1081 | 7 | 1 | 7 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.8000 | 99.5968 | 98.0159 | 88.3710 | 247 | 1 | 247 | 5 | 5 | 100.0000 | |
rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.2249 | 97.6471 | 98.8095 | 91.9617 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e1 | het | 98.9474 | 100.0000 | 97.9167 | 92.6267 | 47 | 0 | 47 | 1 | 1 | 100.0000 | |
rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.3810 | 8 | 1 | 8 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.3114 | 28 | 1 | 28 | 0 | 0 | ||
rpoplin-dv42 | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | * | 76.9231 | 83.3333 | 71.4286 | 97.8373 | 15 | 3 | 15 | 6 | 2 | 33.3333 | |
ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | het | 81.0811 | 93.7500 | 71.4286 | 97.1812 | 15 | 1 | 15 | 6 | 2 | 33.3333 | |
ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-dragen | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-dragen | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-dragen | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-dragen | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-dragen | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | * | 96.4286 | 95.2941 | 97.5904 | 93.1800 | 81 | 4 | 81 | 2 | 0 | 0.0000 | |
ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.8826 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 90.9091 | 7 | 2 | 7 | 0 | 0 | ||
ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.4286 | 93.1034 | 100.0000 | 92.0354 | 27 | 2 | 27 | 0 | 0 | ||
ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 95.3668 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.1749 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 93.3333 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4459 | 94.7269 | 96.1759 | 90.8774 | 503 | 28 | 503 | 20 | 5 | 25.0000 | |
ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | het | 93.6184 | 92.4290 | 94.8387 | 92.0082 | 293 | 24 | 294 | 16 | 2 | 12.5000 | |
ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 95.3368 | 9 | 1 | 9 | 0 | 0 | ||
ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.2837 | 98.5294 | 98.0392 | 87.7182 | 201 | 3 | 200 | 4 | 3 | 75.0000 | |
ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | * | 96.8643 | 97.4293 | 96.3057 | 90.2509 | 758 | 20 | 756 | 29 | 4 | 13.7931 | |
ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | het | 96.2144 | 97.5096 | 94.9533 | 90.7487 | 509 | 13 | 508 | 27 | 2 | 7.4074 | |
ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.7974 | 5 | 3 | 5 | 0 | 0 | ||
ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7838 | 98.3871 | 99.1837 | 88.0020 | 244 | 4 | 243 | 2 | 2 | 100.0000 | |
ckim-dragen | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-dragen | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 |