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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 138 139 140 141 142 143 144 145 146 ... 1720 1721 » 7051-7100 / 86044 show all
dgrover-gatk	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D16_PLUS	HG002complexvar	*	97.6446	97.6263	97.6630	66.8096	1604	39	1588	38	27	71.0526
dgrover-gatk	INDEL	D16_PLUS	HG002complexvar	het	98.2761	98.7353	97.8211	68.7119	1093	14	853	19	9	47.3684
dgrover-gatk	INDEL	D16_PLUS	HG002complexvar	hetalt	93.7238	90.6883	96.9697	48.0899	224	23	448	14	14	100.0000
dgrover-gatk	INDEL	D16_PLUS	HG002complexvar	homalt	98.7952	99.3080	98.2877	76.1047	287	2	287	5	4	80.0000
dgrover-gatk	INDEL	C16_PLUS	HG002complexvar	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	HG002complexvar	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	*	HG002complexvar	*	98.7826	97.6098	99.9840	19.7255	736350	18031	736201	118	58	49.1525
ckim-vqsr	SNP	*	HG002complexvar	het	99.0965	98.2281	99.9803	19.3098	457249	8248	457124	90	32	35.5556
ckim-vqsr	SNP	*	HG002complexvar	hetalt	96.6667	93.5484	100.0000	40.6953	290	20	290	0	0
ckim-vqsr	SNP	*	HG002complexvar	homalt	98.2744	96.6168	99.9900	20.3688	278811	9763	278787	28	26	92.8571
ckim-vqsr	SNP	ti	HG002complexvar	*	98.8535	97.7474	99.9849	18.1351	496983	11453	496925	75	38	50.6667
ckim-vqsr	SNP	ti	HG002complexvar	het	99.1493	98.3302	99.9822	17.7224	309510	5256	309462	55	18	32.7273
ckim-vqsr	SNP	ti	HG002complexvar	hetalt	96.2406	92.7536	100.0000	40.3727	192	15	192	0	0
ckim-vqsr	SNP	ti	HG002complexvar	homalt	98.3712	96.8046	99.9893	18.7775	187281	6182	187271	20	20	100.0000
dgrover-gatk	INDEL	*	HG002complexvar	*	99.5612	99.4476	99.6751	58.4475	76513	425	76380	249	210	84.3373
dgrover-gatk	INDEL	*	HG002complexvar	het	99.6862	99.5586	99.8141	57.9282	46008	204	45634	85	51	60.0000
dgrover-gatk	INDEL	*	HG002complexvar	hetalt	96.4173	94.5931	98.3131	68.7891	3499	200	3730	64	63	98.4375
dgrover-gatk	INDEL	*	HG002complexvar	homalt	99.7765	99.9223	99.6312	57.3581	27006	21	27016	100	96	96.0000
dgrover-gatk	INDEL	*	HG002compoundhet	*	95.1627	94.9733	95.3528	63.3096	28454	1506	28336	1381	1370	99.2035
dgrover-gatk	INDEL	*	HG002compoundhet	het	93.5069	98.4612	89.0273	79.7555	4031	63	3789	467	459	98.2869
dgrover-gatk	INDEL	*	HG002compoundhet	hetalt	96.9439	94.2772	99.7659	51.7927	23739	1441	23863	56	55	98.2143
dgrover-gatk	INDEL	*	HG002compoundhet	homalt	61.4004	99.7085	44.3580	85.1072	684	2	684	858	856	99.7669
dgrover-gatk	INDEL	C6_15	HG002compoundhet	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	HG002compoundhet	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	HG002compoundhet	*	98.8066	97.8931	99.7373	49.7301	8735	188	8732	23	15	65.2174
ckim-vqsr	SNP	tv	HG002compoundhet	het	99.1184	98.6518	99.5894	55.9836	4610	63	4608	19	12	63.1579
ckim-vqsr	SNP	tv	HG002compoundhet	hetalt	97.5030	95.1276	100.0000	23.3645	820	42	820	0	0
ckim-vqsr	SNP	tv	HG002compoundhet	homalt	98.7009	97.5502	99.8791	43.2979	3305	83	3304	4	3	75.0000
dgrover-gatk	INDEL	C1_5	HG002compoundhet	*	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
dgrover-gatk	INDEL	C1_5	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	HG002compoundhet	hetalt	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
dgrover-gatk	INDEL	C1_5	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	*	HG002compoundhet	*	98.9056	97.9940	99.8343	41.9777	25304	518	25301	42	32	76.1905
ckim-vqsr	SNP	*	HG002compoundhet	het	99.1735	98.5964	99.7573	46.7768	13979	199	13977	34	25	73.5294
ckim-vqsr	SNP	*	HG002compoundhet	hetalt	97.5030	95.1276	100.0000	23.3645	820	42	820	0	0
ckim-vqsr	SNP	*	HG002compoundhet	homalt	98.6617	97.4309	99.9239	35.4419	10505	277	10504	8	7	87.5000
ckim-vqsr	SNP	ti	HG002compoundhet	*	98.9109	97.9517	99.8891	36.4634	17120	358	17120	19	17	89.4737
ckim-vqsr	SNP	ti	HG002compoundhet	het	99.2006	98.5692	99.8402	40.6564	9369	136	9369	15	13	86.6667
ckim-vqsr	SNP	ti	HG002compoundhet	hetalt	97.5221	95.1641	100.0000	22.7209	551	28	551	0	0
ckim-vqsr	SNP	ti	HG002compoundhet	homalt	98.6436	97.3763	99.9445	31.0556	7200	194	7200	4	4	100.0000
dgrover-gatk	INDEL	D16_PLUS	HG002compoundhet	*	95.7397	95.5147	95.9657	35.4749	2236	105	2236	94	91	96.8085
dgrover-gatk	INDEL	D16_PLUS	HG002compoundhet	het	89.2587	99.2593	81.0888	59.0856	402	3	283	66	63	95.4545
dgrover-gatk	INDEL	D16_PLUS	HG002compoundhet	hetalt	97.0887	94.7095	99.5904	26.5237	1826	102	1945	8	8	100.0000
dgrover-gatk	INDEL	D16_PLUS	HG002compoundhet	homalt	44.4444	100.0000	28.5714	72.0000	8	0	8	20	20	100.0000

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