PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70751-70800 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | homalt | 99.0436 | 98.2712 | 99.8283 | 75.6142 | 7560 | 133 | 7560 | 13 | 10 | 76.9231 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | * | 96.7832 | 96.6528 | 96.9140 | 81.7370 | 11117 | 385 | 11117 | 354 | 92 | 25.9887 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | het | 95.8056 | 96.0533 | 95.5592 | 83.3978 | 7058 | 290 | 7058 | 328 | 76 | 23.1707 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | homalt | 98.7711 | 98.1858 | 99.3635 | 77.7044 | 4059 | 75 | 4059 | 26 | 16 | 61.5385 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8224 | 91.5254 | 96.2376 | 90.4986 | 486 | 45 | 486 | 19 | 11 | 57.8947 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | het | 92.7769 | 91.1672 | 94.4444 | 92.4314 | 289 | 28 | 289 | 17 | 9 | 52.9412 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | homalt | 97.7667 | 96.5686 | 98.9950 | 84.3553 | 197 | 7 | 197 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 96.8484 | 98.1168 | 95.6124 | 93.1462 | 521 | 10 | 523 | 24 | 3 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.5377 | 97.4763 | 93.6747 | 94.4249 | 309 | 8 | 311 | 21 | 1 | 4.7619 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6332 | 10 | 0 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.7775 | 99.0196 | 98.5366 | 88.5921 | 202 | 2 | 202 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 97.6471 | 97.6471 | 97.6471 | 94.2490 | 83 | 2 | 83 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 95.5128 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.8571 | 8 | 1 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.7810 | 28 | 1 | 28 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6695 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.5610 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.4444 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2036 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | * | 80.8313 | 69.0469 | 97.4662 | 88.8350 | 22240 | 9970 | 22234 | 578 | 42 | 7.2664 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | het | 84.9216 | 75.8827 | 96.4049 | 90.5037 | 15452 | 4911 | 15446 | 576 | 40 | 6.9444 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | homalt | 72.8475 | 57.3011 | 99.9705 | 80.8330 | 6777 | 5050 | 6777 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | * | 81.2473 | 69.4542 | 97.8644 | 88.4201 | 14393 | 6330 | 14389 | 314 | 34 | 10.8280 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | het | 85.3846 | 76.2889 | 96.9428 | 90.1640 | 9929 | 3086 | 9925 | 313 | 33 | 10.5431 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.2331 | 9 | 6 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | homalt | 73.3394 | 57.9098 | 99.9776 | 80.4132 | 4455 | 3238 | 4455 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 86.7925 | 85.1852 | 88.4615 | 96.5517 | 23 | 4 | 23 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 81.2500 | 81.2500 | 81.2500 | 96.9112 | 13 | 3 | 13 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.2366 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.8919 | 94.4444 | 89.4737 | 97.7246 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 97.2435 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.6667 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 95.3248 | 98.0720 | 92.7273 | 92.5454 | 763 | 15 | 765 | 60 | 6 | 10.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 94.0832 | 98.6590 | 89.9130 | 93.3633 | 515 | 7 | 517 | 58 | 4 | 6.8966 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 98.3165 | 5 | 3 | 5 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.5801 | 97.9839 | 99.1837 | 88.3666 | 243 | 5 | 243 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | * | 58.3031 | 43.8450 | 86.9877 | 65.8089 | 9086 | 11637 | 9085 | 1359 | 1198 | 88.1531 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | het | 56.1207 | 39.2931 | 98.1570 | 69.2394 | 5114 | 7901 | 5113 | 96 | 5 | 5.2083 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 75.0000 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | homalt | 61.4051 | 51.5794 | 75.8555 | 61.5254 | 3968 | 3725 | 3968 | 1263 | 1193 | 94.4576 | |
| ndellapenna-hhga | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||