PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70601-70650 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | * | 92.4162 | 91.0354 | 93.8395 | 90.8085 | 1310 | 129 | 1310 | 86 | 55 | 63.9535 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | het | 92.1590 | 92.8571 | 91.4712 | 91.9353 | 858 | 66 | 858 | 80 | 51 | 63.7500 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 23 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | homalt | 95.1579 | 91.8699 | 98.6900 | 87.1240 | 452 | 40 | 452 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e1 | * | 93.7984 | 93.3162 | 94.2857 | 89.3910 | 726 | 52 | 726 | 44 | 22 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e1 | het | 93.7736 | 95.2107 | 92.3792 | 90.5348 | 497 | 25 | 497 | 41 | 21 | 51.2195 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e1 | homalt | 95.4167 | 92.3387 | 98.7069 | 85.2605 | 229 | 19 | 229 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 80.9816 | 77.6471 | 84.6154 | 91.7373 | 66 | 19 | 66 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | het | 85.4369 | 93.6170 | 78.5714 | 92.8844 | 44 | 3 | 44 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | homalt | 86.2745 | 75.8621 | 100.0000 | 85.9873 | 22 | 7 | 22 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 85.7143 | 83.3333 | 88.2353 | 98.6688 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 97.8589 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0731 | 68.3012 | 96.7480 | 89.5225 | 7856 | 3646 | 7854 | 264 | 8 | 3.0303 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | het | 84.1017 | 75.1633 | 95.4530 | 91.0507 | 5523 | 1825 | 5521 | 263 | 7 | 2.6616 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | homalt | 71.9219 | 56.1684 | 99.9570 | 81.5898 | 2322 | 1812 | 2322 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | * | 98.9537 | 98.1229 | 99.7988 | 69.2768 | 20334 | 389 | 20338 | 41 | 16 | 39.0244 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | het | 98.4983 | 97.2647 | 99.7636 | 66.7853 | 12659 | 356 | 12661 | 30 | 5 | 16.6667 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | homalt | 99.7136 | 99.5710 | 99.8566 | 72.6687 | 7660 | 33 | 7662 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 98.3834 | 0 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 98.6175 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.7342 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.8102 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.4286 | 88.8889 | 94.1176 | 90.7609 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 93.7500 | 93.7500 | 93.7500 | 88.1481 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||