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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 137 138 139 140 141 142 143 144 145 ... 1720 1721 » 7001-7050 / 86044 show all
dgrover-gatk	INDEL	D6_15	HG002complexvar	*	98.2978	98.0385	98.5584	58.5437	5198	104	5196	76	69	90.7895
dgrover-gatk	INDEL	D6_15	HG002complexvar	het	99.0464	98.8782	99.2152	59.4430	3085	35	3034	24	18	75.0000
dgrover-gatk	INDEL	D6_15	HG002complexvar	hetalt	94.7256	93.1885	96.3143	48.2949	944	69	993	38	37	97.3684
dgrover-gatk	INDEL	D6_15	HG002complexvar	homalt	99.4048	100.0000	98.8166	62.8338	1169	0	1169	14	14	100.0000
dgrover-gatk	INDEL	I1_5	HG002complexvar	*	99.7285	99.6044	99.8530	57.2674	33231	132	33279	49	38	77.5510
dgrover-gatk	INDEL	I1_5	HG002complexvar	het	99.7798	99.6646	99.8952	58.2404	18128	61	18108	19	9	47.3684
dgrover-gatk	INDEL	I1_5	HG002complexvar	hetalt	98.0896	96.4658	99.7691	70.7729	1665	61	1728	4	4	100.0000
dgrover-gatk	INDEL	I1_5	HG002complexvar	homalt	99.8663	99.9256	99.8070	53.0009	13438	10	13443	26	25	96.1538
ckim-isaac	INDEL	I6_15	HG002complexvar	*	77.4674	68.9900	88.3200	51.9231	3306	1486	3312	438	187	42.6941
ckim-isaac	INDEL	I6_15	HG002complexvar	het	79.6121	75.4140	84.3052	55.5219	1776	579	1735	323	120	37.1517
ckim-isaac	INDEL	I6_15	HG002complexvar	hetalt	70.4127	56.1733	94.3226	46.2179	687	536	731	44	30	68.1818
ckim-isaac	INDEL	I6_15	HG002complexvar	homalt	79.2387	69.4399	92.2574	47.0554	843	371	846	71	37	52.1127
ckim-isaac	SNP	tv	HG002complexvar	*	95.4727	91.5159	99.7871	19.3101	225271	20884	225437	481	401	83.3680
ckim-isaac	SNP	tv	HG002complexvar	het	95.8287	92.0463	99.9352	18.9218	138745	11989	138887	90	17	18.8889
ckim-isaac	SNP	tv	HG002complexvar	hetalt	93.4708	87.7419	100.0000	29.5337	272	38	272	0	0
ckim-isaac	SNP	tv	HG002complexvar	homalt	95.1060	90.6877	99.9768	19.5838	86254	8857	86277	20	16	80.0000
ckim-vqsr	INDEL	*	HG002complexvar	*	99.2578	98.8640	99.6548	58.2159	76064	874	75924	263	222	84.4106
ckim-vqsr	INDEL	*	HG002complexvar	het	99.5556	99.3270	99.7852	57.9433	45901	311	45518	98	61	62.2449
ckim-vqsr	INDEL	*	HG002complexvar	hetalt	91.5318	85.7259	98.1813	66.4504	3171	528	3401	63	63	100.0000
ckim-vqsr	INDEL	*	HG002complexvar	homalt	99.7470	99.8705	99.6237	57.3434	26992	35	27005	102	98	96.0784
ckim-vqsr	INDEL	C16_PLUS	HG002complexvar	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	HG002complexvar	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	SNP	ti	HG002complexvar	*	96.1858	92.7592	99.8753	15.7158	471622	36815	471809	589	446	75.7216
ckim-isaac	SNP	ti	HG002complexvar	het	96.4266	93.1447	99.9482	15.3403	293188	21578	293343	152	18	11.8421
ckim-isaac	SNP	ti	HG002complexvar	hetalt	92.7461	86.4734	100.0000	28.1124	179	28	179	0	0
ckim-isaac	SNP	ti	HG002complexvar	homalt	95.8992	92.1386	99.9798	16.1839	178255	15209	178286	36	29	80.5556
ckim-isaac	INDEL	I16_PLUS	HG002complexvar	*	52.2963	39.2666	78.2675	62.9505	514	795	515	143	46	32.1678
ckim-isaac	INDEL	I16_PLUS	HG002complexvar	het	58.4929	47.6692	75.6757	61.6761	317	348	308	99	23	23.2323
ckim-isaac	INDEL	I16_PLUS	HG002complexvar	hetalt	38.7208	24.7761	88.5714	62.2302	83	252	93	12	10	83.3333
ckim-isaac	INDEL	I16_PLUS	HG002complexvar	homalt	50.1099	36.8932	78.0822	66.5138	114	195	114	32	13	40.6250
ckim-isaac	INDEL	I1_5	HG002complexvar	*	93.9569	91.3347	96.7341	48.5479	30472	2891	30419	1027	555	54.0409
ckim-isaac	INDEL	I1_5	HG002complexvar	het	94.3344	93.1277	95.5727	50.4026	16939	1250	16838	780	423	54.2308
ckim-isaac	INDEL	I1_5	HG002complexvar	hetalt	81.8382	73.1170	92.9216	55.9731	1262	464	1339	102	87	85.2941
ckim-isaac	INDEL	I1_5	HG002complexvar	homalt	94.8874	91.2478	98.8294	44.5077	12271	1177	12242	145	45	31.0345
ckim-isaac	SNP	*	HG002complexvar	*	95.9550	92.3552	99.8467	16.9098	696714	57671	697067	1070	847	79.1589
ckim-isaac	SNP	*	HG002complexvar	het	96.2337	92.7890	99.9440	16.5252	431933	33567	432230	242	35	14.4628
ckim-isaac	SNP	*	HG002complexvar	hetalt	93.4708	87.7419	100.0000	29.5337	272	38	272	0	0
ckim-isaac	SNP	*	HG002complexvar	homalt	95.6391	91.6604	99.9788	17.3239	264509	24066	264563	56	45	80.3571
ckim-vqsr	SNP	tv	HG002complexvar	*	98.6339	97.3216	99.9820	22.8566	239559	6593	239468	43	20	46.5116
ckim-vqsr	SNP	tv	HG002complexvar	het	98.9859	98.0150	99.9763	22.4456	147739	2992	147662	35	14	40.0000
ckim-vqsr	SNP	tv	HG002complexvar	hetalt	96.6667	93.5484	100.0000	40.6953	290	20	290	0	0
ckim-vqsr	SNP	tv	HG002complexvar	homalt	98.0771	96.2349	99.9913	23.4384	91530	3581	91516	8	6	75.0000
dgrover-gatk	INDEL	C1_5	HG002complexvar	*	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
dgrover-gatk	INDEL	C1_5	HG002complexvar	het	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
dgrover-gatk	INDEL	C1_5	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	HG002complexvar	*	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
dgrover-gatk	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0

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