PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70051-70100 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8042 | 0 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | * | 98.9822 | 99.3659 | 98.6015 | 77.4624 | 11283 | 72 | 11281 | 160 | 25 | 15.6250 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | het | 98.6238 | 99.3381 | 97.9198 | 79.8967 | 7204 | 48 | 7202 | 153 | 20 | 13.0719 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 80.0000 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | homalt | 99.6442 | 99.4612 | 99.8279 | 71.1244 | 4061 | 22 | 4061 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3671 | 98.4586 | 98.2759 | 90.2666 | 511 | 8 | 513 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e0 | het | 97.7336 | 97.4110 | 98.0583 | 91.0539 | 301 | 8 | 303 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2880 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.1257 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | * | 99.1151 | 99.3470 | 98.8842 | 77.1865 | 31644 | 208 | 31638 | 357 | 62 | 17.3669 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | het | 98.7961 | 99.2748 | 98.3220 | 79.7541 | 19987 | 146 | 19981 | 341 | 50 | 14.6628 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 80.0000 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | homalt | 99.6746 | 99.4871 | 99.8627 | 70.7014 | 11639 | 60 | 11639 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | * | 99.1869 | 99.3321 | 99.0422 | 77.0287 | 20375 | 137 | 20371 | 197 | 37 | 18.7817 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | het | 98.8935 | 99.2392 | 98.5502 | 79.6724 | 12783 | 98 | 12779 | 188 | 30 | 15.9574 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 75.0000 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | homalt | 99.6909 | 99.5011 | 99.8814 | 70.4694 | 7578 | 38 | 7578 | 9 | 7 | 77.7778 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.3599 | 98.8445 | 99.8806 | 70.6148 | 7528 | 88 | 7528 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | * | 91.6536 | 84.8613 | 99.6277 | 80.3003 | 9636 | 1719 | 9634 | 36 | 13 | 36.1111 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | het | 86.7915 | 76.9719 | 99.4830 | 83.9440 | 5582 | 1670 | 5580 | 29 | 8 | 27.5862 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m2_e0 | homalt | 99.3231 | 98.8244 | 99.8268 | 71.2518 | 4035 | 48 | 4035 | 7 | 5 | 71.4286 | |
| asubramanian-gatk | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 85.7143 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 77.7778 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 84.8485 | 82.3529 | 87.5000 | 98.0198 | 14 | 3 | 14 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 87.5000 | 87.5000 | 87.5000 | 97.3813 | 14 | 2 | 14 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | map_l150_m2_e0 | * | 91.4701 | 84.5033 | 99.6888 | 80.0769 | 26916 | 4936 | 26910 | 84 | 40 | 47.6190 | |
| astatham-gatk | SNP | * | map_l150_m2_e0 | het | 86.3036 | 76.1635 | 99.5583 | 83.9104 | 15334 | 4799 | 15328 | 68 | 27 | 39.7059 | |
| astatham-gatk | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.3470 | 98.8375 | 99.8618 | 70.8404 | 11563 | 136 | 11563 | 16 | 13 | 81.2500 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | * | 91.3750 | 84.3165 | 99.7232 | 79.9461 | 17295 | 3217 | 17291 | 48 | 27 | 56.2500 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | het | 86.0268 | 75.7084 | 99.6015 | 83.8910 | 9752 | 3129 | 9748 | 39 | 19 | 48.7179 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 15 | 0 | 15 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l150_m2_e0 | * | 90.1581 | 85.7955 | 94.9883 | 97.8029 | 1208 | 200 | 1213 | 64 | 7 | 10.9375 | |
| asubramanian-gatk | INDEL | * | map_l150_m2_e0 | het | 87.3084 | 82.6711 | 92.4969 | 93.8067 | 749 | 157 | 752 | 61 | 6 | 9.8361 | |
| asubramanian-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 95.8763 | 19 | 2 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l150_m2_e0 | homalt | 95.2388 | 91.4761 | 99.3243 | 90.2332 | 440 | 41 | 441 | 3 | 1 | 33.3333 | |