PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
651-700 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | * | hetalt | 46.3037 | 30.5358 | 95.7427 | 56.1168 | 2496 | 5678 | 3036 | 135 | 128 | 94.8148 | |
| eyeh-varpipe | INDEL | D6_15 | * | homalt | 70.9562 | 87.6541 | 59.6022 | 44.0635 | 5545 | 781 | 5543 | 3757 | 3655 | 97.2851 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | * | 50.2841 | 36.9610 | 78.6262 | 37.5078 | 2357 | 4020 | 2358 | 641 | 639 | 99.6880 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | het | 50.8662 | 38.8889 | 73.5049 | 38.7042 | 1057 | 1661 | 1057 | 381 | 381 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | hetalt | 18.8152 | 10.4862 | 91.4634 | 56.9177 | 220 | 1878 | 225 | 21 | 21 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | homalt | 74.9769 | 69.1864 | 81.8251 | 30.1275 | 1080 | 481 | 1076 | 239 | 237 | 99.1632 | |
| eyeh-varpipe | INDEL | I1_5 | * | * | 94.9923 | 93.5665 | 96.4622 | 53.4954 | 140971 | 9693 | 141103 | 5175 | 4944 | 95.5362 | |
| eyeh-varpipe | INDEL | I1_5 | * | het | 97.6534 | 97.4342 | 97.8735 | 52.4121 | 77013 | 2028 | 76909 | 1671 | 1507 | 90.1855 | |
| eyeh-varpipe | INDEL | I1_5 | * | hetalt | 60.5783 | 43.9661 | 97.3679 | 73.2444 | 4922 | 6273 | 5216 | 141 | 132 | 93.6170 | |
| eyeh-varpipe | INDEL | I1_5 | * | homalt | 96.1261 | 97.6964 | 94.6055 | 51.8219 | 59036 | 1392 | 58978 | 3363 | 3305 | 98.2753 | |
| eyeh-varpipe | INDEL | I6_15 | * | * | 71.2994 | 63.0343 | 82.0590 | 39.8519 | 15647 | 9176 | 15734 | 3440 | 3408 | 99.0698 | |
| eyeh-varpipe | INDEL | I6_15 | * | het | 83.0781 | 80.3150 | 86.0381 | 40.9246 | 8058 | 1975 | 8048 | 1306 | 1290 | 98.7749 | |
| eyeh-varpipe | INDEL | I6_15 | * | hetalt | 42.6506 | 27.4354 | 95.7540 | 48.5714 | 2346 | 6205 | 2413 | 107 | 106 | 99.0654 | |
| eyeh-varpipe | INDEL | I6_15 | * | homalt | 77.6886 | 84.0359 | 72.2329 | 34.4939 | 5243 | 996 | 5273 | 2027 | 2012 | 99.2600 | |
| eyeh-varpipe | SNP | * | * | * | 99.4670 | 99.9638 | 98.9751 | 20.3427 | 3053527 | 1107 | 2999712 | 31063 | 471 | 1.5163 | |
| eyeh-varpipe | SNP | * | * | het | 99.1531 | 99.9599 | 98.3592 | 21.9487 | 1872850 | 751 | 1837471 | 30653 | 277 | 0.9037 | |
| eyeh-varpipe | SNP | * | * | hetalt | 99.5795 | 99.8852 | 99.2757 | 41.9596 | 870 | 1 | 7539 | 55 | 52 | 94.5455 | |
| eyeh-varpipe | SNP | * | * | homalt | 99.9696 | 99.9699 | 99.9693 | 17.3914 | 1179807 | 355 | 1154702 | 355 | 142 | 40.0000 | |
| eyeh-varpipe | SNP | ti | * | * | 99.7598 | 99.9651 | 99.5553 | 19.0734 | 2084791 | 727 | 2061083 | 9206 | 307 | 3.3348 | |
| eyeh-varpipe | SNP | ti | * | het | 99.6284 | 99.9615 | 99.2976 | 20.5443 | 1281404 | 493 | 1264336 | 8944 | 171 | 1.9119 | |
| eyeh-varpipe | SNP | ti | * | hetalt | 99.5363 | 99.8282 | 99.2460 | 38.4448 | 581 | 1 | 6450 | 49 | 47 | 95.9184 | |
| eyeh-varpipe | SNP | ti | * | homalt | 99.9720 | 99.9710 | 99.9731 | 16.3629 | 802806 | 233 | 790297 | 213 | 89 | 41.7840 | |
| eyeh-varpipe | SNP | tv | * | * | 98.8030 | 99.9607 | 97.6718 | 23.4743 | 969317 | 381 | 958642 | 22851 | 215 | 0.9409 | |
| eyeh-varpipe | SNP | tv | * | het | 98.0748 | 99.9564 | 96.2628 | 25.2886 | 591446 | 258 | 583371 | 22648 | 112 | 0.4945 | |
| eyeh-varpipe | SNP | tv | * | hetalt | 99.3621 | 99.8852 | 98.8445 | 45.4641 | 870 | 1 | 4106 | 48 | 46 | 95.8333 | |
| eyeh-varpipe | SNP | tv | * | homalt | 99.9630 | 99.9676 | 99.9583 | 19.9401 | 377001 | 122 | 371165 | 155 | 57 | 36.7742 | |
| gduggal-bwafb | INDEL | * | * | * | 96.9474 | 95.5004 | 98.4390 | 56.3888 | 329039 | 15503 | 342492 | 5431 | 4691 | 86.3745 | |
| gduggal-bwafb | INDEL | * | * | het | 97.2465 | 95.6571 | 98.8897 | 54.7010 | 185702 | 8431 | 212773 | 2389 | 1710 | 71.5781 | |
| gduggal-bwafb | INDEL | * | * | hetalt | 87.6150 | 80.5643 | 96.0183 | 78.7583 | 20332 | 4905 | 6728 | 279 | 275 | 98.5663 | |
| gduggal-bwafb | INDEL | * | * | homalt | 98.0353 | 98.2688 | 97.8029 | 56.6087 | 123005 | 2167 | 122991 | 2763 | 2706 | 97.9370 | |
| gduggal-bwafb | INDEL | C16_PLUS | * | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | * | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | * | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | * | * | 89.4410 | 90.0000 | 88.8889 | 97.6804 | 9 | 1 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C1_5 | * | het | 88.1890 | 88.8889 | 87.5000 | 96.5368 | 8 | 1 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C1_5 | * | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | * | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | * | * | 84.2105 | 100.0000 | 72.7273 | 98.3257 | 7 | 0 | 8 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | * | het | 93.3333 | 100.0000 | 87.5000 | 97.5831 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 99.5050 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 98.3871 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | * | 85.9986 | 80.3656 | 92.4807 | 53.1498 | 5452 | 1332 | 5633 | 458 | 450 | 98.2533 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | het | 87.0129 | 80.9433 | 94.0664 | 49.5246 | 2557 | 602 | 3995 | 252 | 244 | 96.8254 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | hetalt | 86.0203 | 76.2545 | 98.6547 | 50.8811 | 1474 | 459 | 220 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | homalt | 85.6946 | 83.9835 | 87.4769 | 60.7791 | 1421 | 271 | 1418 | 203 | 203 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | * | * | 98.5809 | 98.0538 | 99.1138 | 59.5290 | 143889 | 2856 | 144727 | 1294 | 903 | 69.7836 | |
| gduggal-bwafb | INDEL | D1_5 | * | het | 98.9590 | 98.4961 | 99.4263 | 56.5657 | 86257 | 1317 | 92550 | 534 | 170 | 31.8352 | |
| gduggal-bwafb | INDEL | D1_5 | * | hetalt | 93.2065 | 88.0527 | 99.0011 | 79.2540 | 9021 | 1224 | 3568 | 36 | 36 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | * | homalt | 98.9426 | 99.3562 | 98.5324 | 61.7935 | 48611 | 315 | 48609 | 724 | 697 | 96.2707 | |