PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69851-69900 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 88.1890 | 88.8889 | 87.5000 | 96.5217 | 8 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.0136 | 98.5075 | 97.5248 | 92.5185 | 198 | 3 | 197 | 5 | 3 | 60.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | * | 91.6113 | 96.9856 | 86.8014 | 90.8198 | 740 | 23 | 730 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | het | 89.5859 | 98.6381 | 82.0555 | 92.0606 | 507 | 7 | 503 | 110 | 12 | 10.9091 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.6797 | 95.8678 | 99.5614 | 84.1667 | 232 | 10 | 227 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 33.3333 | 98.4536 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 98.8950 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 75.0000 | 88.2353 | 65.2174 | 95.9147 | 15 | 2 | 15 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 78.9474 | 93.7500 | 68.1818 | 95.6607 | 15 | 1 | 15 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.2143 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 63.6364 | 70.0000 | 93.5065 | 7 | 4 | 7 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | het | 80.0000 | 100.0000 | 66.6667 | 93.6170 | 6 | 0 | 6 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 92.3077 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | * | 93.9848 | 95.5684 | 92.4528 | 91.6272 | 496 | 23 | 490 | 40 | 14 | 35.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | het | 93.4675 | 98.3819 | 89.0208 | 93.4867 | 304 | 5 | 300 | 37 | 13 | 35.1351 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | homalt | 96.9620 | 95.5224 | 98.4456 | 83.3045 | 192 | 9 | 190 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | * | 82.8213 | 82.9268 | 82.7160 | 93.4835 | 68 | 14 | 67 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | het | 86.7925 | 100.0000 | 76.6667 | 94.4954 | 46 | 0 | 46 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.0000 | 78.5714 | 100.0000 | 86.2745 | 22 | 6 | 21 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 41.3043 | 96.3434 | 0 | 0 | 19 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 32.5000 | 96.4093 | 0 | 0 | 13 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | * | 68.4211 | 52.0000 | 100.0000 | 97.9066 | 13 | 12 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | het | 63.6364 | 46.6667 | 100.0000 | 98.4581 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 97.1963 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 98.9474 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 98.8372 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | * | 68.1876 | 51.8304 | 99.6296 | 96.3966 | 269 | 250 | 269 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | het | 74.2394 | 59.2233 | 99.4565 | 96.5348 | 183 | 126 | 183 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 99.0196 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | homalt | 57.9505 | 40.7960 | 100.0000 | 95.3803 | 82 | 119 | 82 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | * | 67.9659 | 51.5984 | 99.5413 | 91.9142 | 5859 | 5496 | 5859 | 27 | 5 | 18.5185 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | het | 72.7336 | 57.3635 | 99.3551 | 93.0443 | 4160 | 3092 | 4160 | 27 | 5 | 18.5185 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | hetalt | 62.0690 | 45.0000 | 100.0000 | 95.1613 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | homalt | 58.5484 | 41.3911 | 100.0000 | 86.3852 | 1690 | 2393 | 1690 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | * | 30.7692 | 18.1818 | 100.0000 | 98.0198 | 2 | 9 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.7342 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.4444 | 1 | 2 | 1 | 0 | 0 | ||