PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69701-69750 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | * | 73.8487 | 58.8467 | 99.1170 | 95.6820 | 449 | 314 | 449 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | het | 76.0766 | 61.8677 | 98.7578 | 96.0549 | 318 | 196 | 318 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 99.3421 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 69.1892 | 52.8926 | 100.0000 | 93.1660 | 128 | 114 | 128 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | * | 71.6038 | 55.9659 | 99.3695 | 96.1005 | 788 | 620 | 788 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | het | 74.9485 | 60.2649 | 99.0926 | 96.4657 | 546 | 360 | 546 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | hetalt | 64.5161 | 47.6190 | 100.0000 | 98.6431 | 10 | 11 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | homalt | 65.0771 | 48.2328 | 100.0000 | 94.2130 | 232 | 249 | 232 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | * | 78.5714 | 64.7059 | 100.0000 | 97.5877 | 11 | 6 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | het | 76.9231 | 62.5000 | 100.0000 | 97.3890 | 10 | 6 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | * | 98.5004 | 98.6262 | 98.3749 | 78.4095 | 11199 | 156 | 11199 | 185 | 38 | 20.5405 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | het | 97.9956 | 98.4280 | 97.5670 | 79.8007 | 7138 | 114 | 7138 | 178 | 33 | 18.5393 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 83.8983 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | homalt | 99.4097 | 98.9958 | 99.8271 | 75.2959 | 4042 | 41 | 4042 | 7 | 5 | 71.4286 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | * | 75.7576 | 60.9756 | 100.0000 | 96.7384 | 50 | 32 | 50 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | het | 73.9726 | 58.6957 | 100.0000 | 97.7500 | 27 | 19 | 27 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 96.5035 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | homalt | 78.2609 | 64.2857 | 100.0000 | 90.5263 | 18 | 10 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | * | 69.0909 | 76.0000 | 63.3333 | 94.0358 | 19 | 6 | 19 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 94.4812 | 15 | 0 | 15 | 10 | 4 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | homalt | 66.6667 | 57.1429 | 80.0000 | 90.0000 | 4 | 3 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | * | 94.9737 | 97.7584 | 92.3433 | 83.0785 | 31138 | 714 | 30742 | 2549 | 141 | 5.5316 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | het | 93.0021 | 97.9685 | 88.5150 | 85.7521 | 19724 | 409 | 19491 | 2529 | 126 | 4.9822 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | homalt | 98.6803 | 97.5639 | 99.8226 | 73.2845 | 11414 | 285 | 11251 | 20 | 15 | 75.0000 | |
| gduggal-snapfb | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | * | 95.3841 | 97.5624 | 93.3010 | 83.0334 | 20012 | 500 | 19833 | 1424 | 93 | 6.5309 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | het | 93.6309 | 97.7486 | 89.8461 | 85.7790 | 12591 | 290 | 12494 | 1412 | 84 | 5.9490 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | homalt | 98.6236 | 97.4396 | 99.8368 | 73.2710 | 7421 | 195 | 7339 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | * | 94.0699 | 97.9833 | 90.4572 | 83.2501 | 11126 | 229 | 11100 | 1171 | 50 | 4.2699 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | het | 91.7382 | 98.3591 | 85.9524 | 85.7991 | 7133 | 119 | 7116 | 1163 | 44 | 3.7833 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | homalt | 98.7875 | 97.7957 | 99.7996 | 73.3173 | 3993 | 90 | 3984 | 8 | 6 | 75.0000 | |
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||