PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69601-69650 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 89.4737 | 100.0000 | 80.9524 | 96.3093 | 17 | 0 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 91.4286 | 100.0000 | 84.2105 | 95.4976 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.1597 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.0270 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.4467 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 92.0354 | 81 | 1 | 81 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.3140 | 46 | 0 | 46 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 88.4120 | 27 | 1 | 27 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.4649 | 98.6513 | 98.2792 | 90.3452 | 512 | 7 | 514 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | het | 97.8993 | 97.7346 | 98.0645 | 91.3359 | 302 | 7 | 304 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0352 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 87.3449 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0583 | 99.0826 | 97.0551 | 89.2528 | 756 | 7 | 758 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5224 | 99.2218 | 95.8801 | 89.6170 | 510 | 4 | 512 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.7186 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.3789 | 99.1736 | 99.5851 | 87.0500 | 240 | 2 | 240 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_l150_m2_e0 | * | 99.2101 | 98.8933 | 99.5289 | 73.1343 | 20285 | 227 | 20283 | 96 | 36 | 37.5000 | |
| jli-custom | SNP | ti | map_l150_m2_e0 | het | 98.9128 | 98.5327 | 99.2958 | 74.7496 | 12692 | 189 | 12690 | 90 | 30 | 33.3333 | |
| jli-custom | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.9412 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l150_m2_e0 | homalt | 99.7105 | 99.5011 | 99.9209 | 69.8737 | 7578 | 38 | 7578 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | * | 95.8724 | 97.9403 | 93.8900 | 93.2577 | 1379 | 29 | 1383 | 90 | 9 | 10.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | het | 94.5436 | 98.1236 | 91.2155 | 94.1716 | 889 | 17 | 893 | 86 | 6 | 6.9767 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.1207 | 18 | 3 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | homalt | 98.6416 | 98.1289 | 99.1597 | 89.6206 | 472 | 9 | 472 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||