PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69401-69450 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | * | 95.1063 | 93.9024 | 96.3415 | 90.6712 | 77 | 5 | 79 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | het | 96.9444 | 97.8261 | 96.0784 | 91.1458 | 45 | 1 | 49 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 94.0000 | 5 | 3 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.4286 | 96.4286 | 96.4286 | 88.9328 | 27 | 1 | 27 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | * | 97.1429 | 100.0000 | 94.4444 | 92.7419 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 90.2857 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | * | map_l150_m2_e0 | * | 97.7239 | 97.5142 | 97.9345 | 98.6965 | 1373 | 35 | 1375 | 29 | 10 | 34.4828 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e0 | het | 97.4639 | 97.3510 | 97.5771 | 89.7297 | 882 | 24 | 886 | 22 | 6 | 27.2727 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.9799 | 18 | 3 | 16 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l150_m2_e0 | homalt | 98.4391 | 98.3368 | 98.5417 | 89.3000 | 473 | 8 | 473 | 7 | 4 | 57.1429 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | * | 77.9463 | 64.3545 | 98.8166 | 91.4754 | 334 | 185 | 334 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | het | 82.4197 | 70.5502 | 99.0909 | 92.6224 | 218 | 91 | 218 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 95.4839 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | homalt | 69.8718 | 54.2289 | 98.1982 | 86.5942 | 109 | 92 | 109 | 2 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | map_l150_m2_e0 | * | 72.1859 | 56.5571 | 99.7506 | 77.5984 | 11601 | 8911 | 11601 | 29 | 5 | 17.2414 | |
| ckim-isaac | SNP | ti | map_l150_m2_e0 | het | 75.7150 | 61.0434 | 99.6704 | 79.9741 | 7863 | 5018 | 7863 | 26 | 2 | 7.6923 | |
| ckim-isaac | SNP | ti | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.3659 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m2_e0 | homalt | 65.7563 | 49.0021 | 99.9197 | 70.0457 | 3732 | 3884 | 3732 | 3 | 3 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l150_m2_e0 | * | 67.6247 | 51.1845 | 99.6230 | 78.7586 | 5812 | 5543 | 5813 | 22 | 7 | 31.8182 | |
| ckim-isaac | SNP | tv | map_l150_m2_e0 | het | 71.5812 | 55.9018 | 99.4848 | 80.5969 | 4054 | 3198 | 4055 | 21 | 6 | 28.5714 | |
| ckim-isaac | SNP | tv | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m2_e0 | homalt | 59.9931 | 42.8606 | 99.9429 | 72.5764 | 1750 | 2333 | 1750 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e0 | * | 96.2276 | 95.9517 | 96.5050 | 93.5044 | 1351 | 57 | 1353 | 49 | 6 | 12.2449 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e0 | het | 94.8645 | 94.7020 | 95.0276 | 94.4740 | 858 | 48 | 860 | 45 | 4 | 8.8889 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.9821 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m2_e0 | homalt | 98.9583 | 98.7526 | 99.1649 | 89.9349 | 475 | 6 | 475 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | map_l150_m2_e0 | * | 70.6023 | 54.6496 | 99.7079 | 77.9961 | 17407 | 14445 | 17408 | 51 | 12 | 23.5294 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | het | 74.2562 | 59.1914 | 99.6072 | 80.1907 | 11917 | 8216 | 11918 | 47 | 8 | 17.0213 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e0 | homalt | 63.7998 | 46.8587 | 99.9271 | 70.9027 | 5482 | 6217 | 5482 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 11 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | * | 38.7097 | 24.0000 | 100.0000 | 97.7848 | 6 | 19 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 98.7069 | 3 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.6829 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 97.6744 | 1 | 6 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | * | 66.8194 | 50.4631 | 98.8632 | 91.2397 | 10351 | 10161 | 10349 | 119 | 3 | 2.5210 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | het | 78.3377 | 64.9794 | 98.6095 | 91.3777 | 8370 | 4511 | 8368 | 118 | 2 | 1.6949 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | homalt | 41.2133 | 25.9585 | 99.9494 | 90.5585 | 1977 | 5639 | 1977 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||