PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69301-69350 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | * | map_l150_m2_e0 | * | 99.1679 | 99.1680 | 99.1679 | 78.4218 | 31587 | 265 | 31581 | 265 | 60 | 22.6415 | |
| dgrover-gatk | SNP | * | map_l150_m2_e0 | het | 98.9689 | 99.1805 | 98.7582 | 81.1353 | 19968 | 165 | 19962 | 251 | 50 | 19.9203 | |
| dgrover-gatk | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.5153 | 99.1538 | 99.8795 | 71.2083 | 11600 | 99 | 11600 | 14 | 10 | 71.4286 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.8855 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.9064 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.5517 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 98.4582 | 98.2659 | 98.6513 | 90.9250 | 510 | 9 | 512 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 98.0498 | 97.4110 | 98.6971 | 91.7517 | 301 | 8 | 303 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9459 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.5634 | 200 | 1 | 200 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 98.3008 | 98.4273 | 98.1747 | 90.2973 | 751 | 12 | 753 | 14 | 3 | 21.4286 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0706 | 98.6381 | 97.5096 | 90.6250 | 507 | 7 | 509 | 13 | 2 | 15.3846 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.6562 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9605 | 98.3471 | 99.5816 | 88.5151 | 238 | 4 | 238 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 97.1564 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.8037 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.8947 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8351 | 98.0341 | 97.6369 | 88.8302 | 748 | 15 | 909 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0741 | 98.6381 | 97.5166 | 87.5310 | 507 | 7 | 589 | 15 | 5 | 33.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.9789 | 4 | 3 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.8628 | 97.9339 | 97.7918 | 89.9684 | 237 | 5 | 310 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.1304 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | * | 85.1927 | 82.3529 | 88.2353 | 90.6593 | 14 | 3 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.3226 | 87.5000 | 93.3333 | 85.7143 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.4848 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 78.7879 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 77.7778 | 2 | 4 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6695 | 97.3025 | 98.0392 | 88.0317 | 505 | 14 | 800 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0183 | 96.4401 | 97.6035 | 87.5509 | 298 | 11 | 448 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.2748 | 7 | 2 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0179 | 99.5025 | 98.5380 | 88.0795 | 200 | 1 | 337 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | * | 77.4055 | 68.0000 | 89.8305 | 85.8852 | 17 | 8 | 53 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | het | 70.0000 | 60.0000 | 84.0000 | 87.9808 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 76.7442 | 2 | 1 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | homalt | 88.5906 | 85.7143 | 91.6667 | 85.6287 | 6 | 1 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | * | 88.3436 | 87.8049 | 88.8889 | 89.8462 | 72 | 10 | 88 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | het | 95.1374 | 97.8261 | 92.5926 | 88.8430 | 45 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 89.4118 | 4 | 4 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | homalt | 81.3415 | 82.1429 | 80.5556 | 91.1330 | 23 | 5 | 29 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 92.5926 | 97.2644 | 0 | 0 | 25 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.7143 | 0 | 0 | 10 | 2 | 0 | 0.0000 | |