PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 134 135 136 137 138 139 140 141 142 ... 1720 1721 » 6851-6900 / 86044 show all
jpowers-varprowl	SNP	*	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	310	0	0	0
jpowers-varprowl	SNP	*	HG002complexvar	homalt	99.6393	99.9463	99.3342	21.7803	288419	155	288542	1934	1452	75.0776
ckim-vqsr	INDEL	D16_PLUS	HG002complexvar	*	97.6423	97.5046	97.7805	66.9855	1602	41	1586	36	28	77.7778
ckim-vqsr	INDEL	D16_PLUS	HG002complexvar	het	98.3872	98.7353	98.0415	69.0000	1093	14	851	17	10	58.8235
ckim-vqsr	INDEL	D16_PLUS	HG002complexvar	hetalt	93.2896	89.8785	96.9697	47.4403	222	25	448	14	14	100.0000
ckim-vqsr	INDEL	D16_PLUS	HG002complexvar	homalt	98.7952	99.3080	98.2877	76.3371	287	2	287	5	4	80.0000
ckim-vqsr	INDEL	I16_PLUS	HG002complexvar	*	98.2632	97.2498	99.2980	66.9502	1273	36	1273	9	9	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002complexvar	het	98.7823	97.5940	100.0000	64.8679	649	16	625	0	0
ckim-vqsr	INDEL	I16_PLUS	HG002complexvar	hetalt	96.6468	94.0299	99.4135	66.8932	315	20	339	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002complexvar	homalt	98.8800	100.0000	97.7848	70.4673	309	0	309	7	7	100.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	*	99.3737	98.9030	99.8489	56.8918	32997	366	33042	50	41	82.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	het	99.6583	99.4392	99.8784	58.1585	18087	102	18064	22	13	59.0909
ckim-vqsr	INDEL	I1_5	HG002complexvar	hetalt	92.1493	85.6315	99.7409	68.7323	1478	248	1540	4	4	100.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	homalt	99.8514	99.8810	99.8217	52.9334	13432	16	13438	24	24	100.0000
ckim-vqsr	INDEL	I6_15	HG002complexvar	*	98.1251	97.1828	99.0859	57.0293	4657	135	4661	43	42	97.6744
ckim-vqsr	INDEL	I6_15	HG002complexvar	het	99.2942	98.8110	99.7821	59.6661	2327	28	2290	5	4	80.0000
ckim-vqsr	INDEL	I6_15	HG002complexvar	hetalt	95.4701	91.3328	100.0000	52.5604	1117	106	1158	0	0
ckim-vqsr	INDEL	I6_15	HG002complexvar	homalt	98.4178	99.9176	96.9624	55.5753	1213	1	1213	38	38	100.0000
ckim-vqsr	INDEL	D6_15	HG002complexvar	*	98.0282	97.5292	98.5322	58.5722	5171	131	5169	77	70	90.9091
ckim-vqsr	INDEL	D6_15	HG002complexvar	het	98.8682	98.6538	99.0835	59.5418	3078	42	3027	28	22	78.5714
ckim-vqsr	INDEL	D6_15	HG002complexvar	hetalt	93.7593	91.3129	96.3403	47.3985	925	88	974	37	37	100.0000
ckim-vqsr	INDEL	D6_15	HG002complexvar	homalt	99.4466	99.9145	98.9831	63.0094	1168	1	1168	12	11	91.6667
ckim-vqsr	INDEL	C1_5	HG002complexvar	*	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
ckim-vqsr	INDEL	C1_5	HG002complexvar	het	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
ckim-vqsr	INDEL	C1_5	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C1_5	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	HG002complexvar	*	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
ckim-vqsr	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
ckim-vqsr	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	D1_5	HG002complexvar	*	99.4499	99.1625	99.7391	58.6120	32441	274	32494	85	69	81.1765
ckim-vqsr	INDEL	D1_5	HG002complexvar	het	99.6767	99.4799	99.8743	56.3731	20657	108	20661	26	12	46.1538
ckim-vqsr	INDEL	D1_5	HG002complexvar	hetalt	92.5788	88.8314	96.6563	72.4212	1201	151	1243	43	43	100.0000
ckim-vqsr	INDEL	D1_5	HG002complexvar	homalt	99.8538	99.8585	99.8491	60.1802	10583	15	10590	16	14	87.5000
egarrison-hhga	INDEL	C16_PLUS	HG002complexvar	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	C16_PLUS	HG002complexvar	het		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	C16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	C16_PLUS	HG002complexvar	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	C1_5	HG002complexvar	*		28.5714		100.0000	2	5	0	0	0
egarrison-hhga	INDEL	D1_5	HG002complexvar	*	97.4539	97.1695	97.7400	55.3894	31789	926	31787	735	582	79.1837
egarrison-hhga	INDEL	D1_5	HG002complexvar	het	97.8863	98.0978	97.6758	52.4481	20370	395	20424	486	392	80.6584
egarrison-hhga	INDEL	D1_5	HG002complexvar	hetalt	79.1212	67.7515	95.0766	77.6746	916	436	869	45	42	93.3333
egarrison-hhga	INDEL	D1_5	HG002complexvar	homalt	98.5958	99.1036	98.0931	56.9237	10503	95	10494	204	148	72.5490
egarrison-hhga	INDEL	D6_15	HG002complexvar	*	89.5440	86.4579	92.8586	57.3769	4584	718	4590	353	276	78.1870
egarrison-hhga	INDEL	D6_15	HG002complexvar	het	93.0974	94.0064	92.2058	56.4938	2933	187	2993	253	209	82.6087
egarrison-hhga	INDEL	D6_15	HG002complexvar	hetalt	65.3629	50.0494	94.1788	58.1739	507	506	453	28	24	85.7143
egarrison-hhga	INDEL	D6_15	HG002complexvar	homalt	95.9329	97.8614	94.0789	59.2766	1144	25	1144	72	43	59.7222
egarrison-hhga	INDEL	I16_PLUS	HG002complexvar	*	92.4901	89.3812	95.8231	64.9842	1170	139	1170	51	30	58.8235
egarrison-hhga	INDEL	I16_PLUS	HG002complexvar	het	93.2920	90.2256	96.5742	65.0712	600	65	592	21	7	33.3333
egarrison-hhga	INDEL	I16_PLUS	HG002complexvar	hetalt	89.9158	83.5821	97.2881	65.1300	280	55	287	8	5	62.5000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge