PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68901-68950 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 10.0000 | 98.2699 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 99.1189 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 12.5000 | 97.7208 | 0 | 0 | 1 | 7 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | * | 65.2883 | 59.0199 | 73.0465 | 93.1719 | 831 | 577 | 832 | 307 | 191 | 62.2150 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | het | 66.9093 | 62.8035 | 71.5895 | 93.6451 | 569 | 337 | 572 | 227 | 132 | 58.1498 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 1 | 20 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l150_m2_e0 | homalt | 63.4799 | 54.2620 | 76.4706 | 91.7215 | 261 | 220 | 260 | 80 | 59 | 73.7500 | |
| ckim-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | * | map_l150_m2_e0 | * | 95.7609 | 98.4375 | 93.2260 | 93.1205 | 1386 | 22 | 1390 | 101 | 9 | 8.9109 | |
| ckim-gatk | INDEL | * | map_l150_m2_e0 | het | 94.2693 | 98.5651 | 90.3323 | 93.9690 | 893 | 13 | 897 | 96 | 6 | 6.2500 | |
| ckim-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.9821 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m2_e0 | homalt | 98.8554 | 98.7526 | 98.9583 | 89.9160 | 475 | 6 | 475 | 5 | 3 | 60.0000 | |
| ckim-dragen | SNP | ti | map_l150_m2_e0 | * | 98.2329 | 98.8933 | 97.5811 | 78.1929 | 20285 | 227 | 20292 | 503 | 67 | 13.3201 | |
| ckim-dragen | SNP | ti | map_l150_m2_e0 | het | 97.5203 | 98.7579 | 96.3134 | 81.5763 | 12721 | 160 | 12723 | 487 | 52 | 10.6776 | |
| ckim-dragen | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.1461 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m2_e0 | homalt | 99.4533 | 99.1203 | 99.7886 | 67.8815 | 7549 | 67 | 7554 | 16 | 15 | 93.7500 | |
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e0 | * | 97.9592 | 96.0000 | 100.0000 | 95.7219 | 24 | 1 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e0 | het | 96.5517 | 93.3333 | 100.0000 | 96.0114 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7831 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | tv | map_l150_m2_e0 | * | 98.2503 | 98.9080 | 97.6013 | 79.0121 | 11231 | 124 | 11230 | 276 | 27 | 9.7826 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | het | 97.5182 | 98.6211 | 96.4396 | 82.0747 | 7152 | 100 | 7151 | 264 | 17 | 6.4394 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m2_e0 | homalt | 99.5708 | 99.4367 | 99.7053 | 69.4134 | 4060 | 23 | 4060 | 12 | 10 | 83.3333 | |
| ckim-dragen | SNP | * | map_l150_m2_e0 | * | 98.2382 | 98.8980 | 97.5872 | 78.4892 | 31501 | 351 | 31507 | 779 | 94 | 12.0668 | |
| ckim-dragen | SNP | * | map_l150_m2_e0 | het | 97.5195 | 98.7086 | 96.3588 | 81.7586 | 19873 | 260 | 19874 | 751 | 69 | 9.1878 | |
| ckim-dragen | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m2_e0 | homalt | 99.4944 | 99.2307 | 99.7595 | 68.4345 | 11609 | 90 | 11614 | 28 | 25 | 89.2857 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.4654 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 88.7246 | 93.7500 | 84.2105 | 94.4928 | 15 | 1 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 96.2251 | 95.9538 | 96.4981 | 89.5528 | 498 | 21 | 496 | 18 | 3 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 94.8873 | 94.8220 | 94.9527 | 90.6157 | 293 | 16 | 301 | 16 | 2 | 12.5000 | |