PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68701-68750 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | * | 97.3631 | 96.6654 | 98.0710 | 80.0739 | 19828 | 684 | 19828 | 390 | 140 | 35.8974 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | het | 96.4300 | 95.8311 | 97.0364 | 82.0218 | 12344 | 537 | 12344 | 377 | 130 | 34.4828 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | homalt | 99.0406 | 98.2668 | 99.8266 | 75.5854 | 7484 | 132 | 7484 | 13 | 10 | 76.9231 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e0 | * | 96.7549 | 96.6270 | 96.8830 | 81.7123 | 10972 | 383 | 10972 | 353 | 92 | 26.0623 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e0 | het | 95.7712 | 96.0287 | 95.5150 | 83.3577 | 6964 | 288 | 6964 | 327 | 76 | 23.2416 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l150_m2_e0 | homalt | 98.7557 | 98.1631 | 99.3555 | 77.7336 | 4008 | 75 | 4008 | 26 | 16 | 61.5385 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e0 | * | 93.8735 | 91.5222 | 96.3489 | 90.4328 | 475 | 44 | 475 | 18 | 11 | 61.1111 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e0 | het | 92.7393 | 90.9385 | 94.6128 | 92.4119 | 281 | 28 | 281 | 16 | 9 | 56.2500 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.7330 | 96.5174 | 98.9796 | 84.1808 | 194 | 7 | 194 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | * | 96.6549 | 94.3892 | 99.0320 | 86.0395 | 1329 | 79 | 1330 | 13 | 3 | 23.0769 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | het | 95.3640 | 91.9426 | 99.0499 | 82.6284 | 833 | 73 | 834 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.9745 | 18 | 3 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | homalt | 99.1690 | 99.3763 | 98.9627 | 88.0782 | 478 | 3 | 477 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6645 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.4444 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2036 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | * | 80.7195 | 68.8748 | 97.4842 | 88.8293 | 21938 | 9914 | 21932 | 566 | 41 | 7.2438 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | het | 84.8178 | 75.7016 | 96.4302 | 90.4936 | 15241 | 4892 | 15235 | 564 | 39 | 6.9149 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | homalt | 72.7253 | 57.1502 | 99.9701 | 80.8789 | 6686 | 5013 | 6686 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1818 | 98.7805 | 97.5904 | 94.2640 | 81 | 1 | 81 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 95.5056 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6606 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.0000 | 27 | 1 | 27 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.7078 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.0060 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.6667 | 6 | 1 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.6773 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 97.1875 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 95.3628 | 98.1651 | 92.7160 | 92.5428 | 749 | 14 | 751 | 59 | 5 | 8.4746 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 94.0939 | 98.8327 | 89.7887 | 93.3263 | 508 | 6 | 510 | 58 | 4 | 6.8966 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.6254 | 4 | 3 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.7500 | 97.9339 | 99.5798 | 88.4466 | 237 | 5 | 237 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | * | 81.1449 | 69.3009 | 97.8719 | 88.3988 | 14215 | 6297 | 14211 | 309 | 34 | 11.0032 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | het | 85.2876 | 76.1276 | 96.9535 | 90.1394 | 9806 | 3075 | 9802 | 308 | 33 | 10.7143 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.2331 | 9 | 6 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | homalt | 73.2296 | 57.7731 | 99.9773 | 80.4374 | 4400 | 3216 | 4400 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8684 | 98.0732 | 95.6929 | 93.1327 | 509 | 10 | 511 | 23 | 3 | 13.0435 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5756 | 97.4110 | 93.8080 | 94.4224 | 301 | 8 | 303 | 20 | 1 | 5.0000 | |