PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68251-68300 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.7179 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | * | 97.2191 | 96.5620 | 97.8852 | 87.7089 | 1292 | 46 | 1296 | 28 | 4 | 14.2857 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | het | 96.8336 | 96.3743 | 97.2973 | 87.9068 | 824 | 31 | 828 | 23 | 2 | 8.6957 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.5943 | 18 | 3 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | homalt | 98.1461 | 97.4026 | 98.9011 | 86.8269 | 450 | 12 | 450 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | * | 97.6748 | 97.2347 | 98.1189 | 98.7054 | 1301 | 37 | 1304 | 25 | 9 | 36.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | het | 97.3051 | 96.8421 | 97.7726 | 88.7274 | 828 | 27 | 834 | 19 | 5 | 26.3158 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.8101 | 18 | 3 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | homalt | 98.5915 | 98.4848 | 98.6985 | 87.6408 | 455 | 7 | 455 | 6 | 4 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | * | 61.2987 | 46.6403 | 89.3939 | 82.1138 | 236 | 270 | 236 | 28 | 25 | 89.2857 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | het | 58.8785 | 42.1405 | 97.6744 | 82.3529 | 126 | 173 | 126 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.5455 | 3 | 6 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | homalt | 64.8485 | 54.0404 | 81.0606 | 80.8696 | 107 | 91 | 107 | 25 | 23 | 92.0000 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | * | 56.8574 | 42.3346 | 86.5470 | 60.8408 | 8345 | 11367 | 8344 | 1297 | 1150 | 88.6662 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | het | 54.4721 | 37.6880 | 98.2090 | 64.1838 | 4662 | 7708 | 4661 | 85 | 5 | 5.8824 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 66.6667 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | homalt | 60.2226 | 50.2115 | 75.2198 | 56.9340 | 3679 | 3648 | 3679 | 1212 | 1145 | 94.4719 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | * | 56.0020 | 42.3295 | 82.7209 | 62.1223 | 4619 | 6293 | 4615 | 964 | 841 | 87.2407 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | het | 53.4835 | 36.7982 | 97.8528 | 67.3388 | 2556 | 4390 | 2552 | 56 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 68.4211 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | homalt | 59.5283 | 52.1287 | 69.3761 | 55.9108 | 2057 | 1889 | 2057 | 908 | 841 | 92.6211 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | * | 62.3288 | 52.0000 | 77.7778 | 89.1566 | 13 | 12 | 14 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | het | 64.5740 | 53.3333 | 81.8182 | 86.4198 | 8 | 7 | 9 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 93.0556 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | * | 56.5558 | 42.3405 | 85.1406 | 61.3631 | 12960 | 17649 | 12955 | 2261 | 1991 | 88.0584 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | het | 54.1179 | 37.3680 | 98.0827 | 65.3701 | 7218 | 12098 | 7213 | 141 | 5 | 3.5461 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 68.4211 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l150_m1_e0 | homalt | 59.9718 | 50.8826 | 73.0143 | 56.6613 | 5736 | 5537 | 5736 | 2120 | 1986 | 93.6792 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | * | 99.1152 | 98.8890 | 99.3424 | 73.3921 | 19493 | 219 | 19489 | 129 | 91 | 70.5426 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | het | 98.9713 | 98.7874 | 99.1558 | 74.5638 | 12220 | 150 | 12216 | 104 | 67 | 64.4231 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | hetalt | 93.7500 | 100.0000 | 88.2353 | 85.0877 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | homalt | 99.3702 | 99.0583 | 99.6841 | 71.0853 | 7258 | 69 | 7258 | 23 | 22 | 95.6522 | |