PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68151-68200 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 93.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 66.4395 | 92.8571 | 51.7241 | 96.7232 | 13 | 1 | 15 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.1497 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 84.3978 | 75.4533 | 95.7480 | 93.2533 | 541 | 176 | 608 | 27 | 23 | 85.1852 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 84.3881 | 76.1411 | 94.6387 | 94.4659 | 367 | 115 | 406 | 23 | 19 | 82.6087 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 57.1429 | 100.0000 | 4 | 3 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 84.7106 | 74.5614 | 98.0583 | 87.3775 | 170 | 58 | 202 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.5037 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.7135 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.6744 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | * | 97.8620 | 97.3842 | 98.3446 | 98.9844 | 1303 | 35 | 1307 | 22 | 10 | 45.4545 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | het | 97.5275 | 96.7251 | 98.3432 | 88.8109 | 827 | 28 | 831 | 14 | 5 | 35.7143 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 95.7447 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | homalt | 98.7013 | 98.7013 | 98.7013 | 88.1081 | 456 | 6 | 456 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | * | 98.9969 | 99.0469 | 98.9470 | 74.2022 | 10808 | 104 | 10806 | 115 | 3 | 2.6087 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | het | 98.5915 | 98.7763 | 98.4075 | 76.8439 | 6861 | 85 | 6859 | 111 | 1 | 0.9009 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.2857 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | homalt | 99.7335 | 99.5692 | 99.8983 | 67.6642 | 3929 | 17 | 3929 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | * | 98.9484 | 98.9905 | 98.9063 | 73.9052 | 30300 | 309 | 30294 | 335 | 11 | 3.2836 | |
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | het | 98.5115 | 98.6954 | 98.3283 | 76.6149 | 19064 | 252 | 19058 | 324 | 3 | 0.9259 | |
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.2857 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | homalt | 99.7067 | 99.5121 | 99.9020 | 67.3803 | 11218 | 55 | 11218 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | * | 98.9223 | 98.9600 | 98.8846 | 73.7335 | 19507 | 205 | 19503 | 220 | 8 | 3.6364 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | het | 98.4666 | 98.6500 | 98.2839 | 76.4844 | 12203 | 167 | 12199 | 213 | 2 | 0.9390 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 15 | 0 | 15 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | homalt | 99.6923 | 99.4814 | 99.9041 | 67.2252 | 7289 | 38 | 7289 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 97.0226 | 96.4427 | 97.6096 | 87.2589 | 488 | 18 | 490 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | het | 96.1457 | 95.6522 | 96.6443 | 87.6707 | 286 | 13 | 288 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.4828 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4772 | 97.9798 | 98.9796 | 85.7765 | 194 | 4 | 194 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | * | 84.4444 | 76.0000 | 95.0000 | 93.2432 | 19 | 6 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | het | 84.6154 | 73.3333 | 100.0000 | 93.3333 | 11 | 4 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 94.5946 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |