PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68101-68150 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 90.9091 | 100.0000 | 83.3333 | 96.1864 | 15 | 0 | 15 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 95.4674 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.9130 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | * | 99.2283 | 99.3662 | 99.0908 | 76.3631 | 30415 | 194 | 30409 | 279 | 34 | 12.1864 | |
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | het | 98.9149 | 99.1251 | 98.7057 | 78.5477 | 19147 | 169 | 19141 | 251 | 23 | 9.1634 | |
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | homalt | 99.7650 | 99.7782 | 99.7517 | 71.3283 | 11248 | 25 | 11248 | 28 | 11 | 39.2857 | |
| hfeng-pmm3 | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | * | 99.1035 | 99.2944 | 98.9134 | 76.5808 | 10835 | 77 | 10833 | 119 | 14 | 11.7647 | |
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | het | 98.7581 | 99.0498 | 98.4681 | 78.5736 | 6880 | 66 | 6878 | 107 | 10 | 9.3458 | |
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | homalt | 99.7086 | 99.7212 | 99.6960 | 71.9235 | 3935 | 11 | 3935 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | * | 98.2484 | 98.3558 | 98.1413 | 87.8949 | 1316 | 22 | 1320 | 25 | 6 | 24.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | het | 97.9024 | 98.0117 | 97.7933 | 88.3397 | 838 | 17 | 842 | 19 | 3 | 15.7895 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.4904 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | homalt | 98.9201 | 99.1342 | 98.7069 | 86.2069 | 458 | 4 | 458 | 6 | 3 | 50.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 94.7991 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.9416 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.1220 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | * | 99.2981 | 99.4065 | 99.1899 | 76.2408 | 19595 | 117 | 19591 | 160 | 20 | 12.5000 | |
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | het | 99.0031 | 99.1673 | 98.8394 | 78.5331 | 12267 | 103 | 12263 | 144 | 13 | 9.0278 | |
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.5625 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | homalt | 99.7953 | 99.8089 | 99.7817 | 70.9972 | 7313 | 14 | 7313 | 16 | 7 | 43.7500 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | * | 99.0365 | 98.2955 | 99.7888 | 72.3511 | 19376 | 336 | 19376 | 41 | 23 | 56.0976 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | het | 98.6644 | 97.6395 | 99.7111 | 73.7513 | 12078 | 292 | 12078 | 35 | 17 | 48.5714 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 81.2500 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | homalt | 99.6785 | 99.4404 | 99.9177 | 69.6369 | 7286 | 41 | 7286 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | * | 98.9384 | 98.2221 | 99.6652 | 71.6791 | 10718 | 194 | 10718 | 36 | 17 | 47.2222 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | het | 98.5385 | 97.5525 | 99.5446 | 72.4747 | 6776 | 170 | 6776 | 31 | 13 | 41.9355 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | homalt | 99.6826 | 99.4932 | 99.8728 | 70.1019 | 3926 | 20 | 3926 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | * | 80.7260 | 70.7025 | 94.0610 | 93.9470 | 946 | 392 | 1172 | 74 | 36 | 48.6486 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | het | 80.8118 | 71.6959 | 92.5834 | 95.0292 | 613 | 242 | 749 | 60 | 29 | 48.3333 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 14 | 7 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m1_e0 | homalt | 80.5851 | 69.0476 | 96.7517 | 89.5717 | 319 | 143 | 417 | 14 | 7 | 50.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 88.5714 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||