PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1357 1358 1359 1360 1361 1362 1363 1364 1365 ... 1720 1721 » 68001-68050 / 86044 show all
jlack-gatk	INDEL	I16_PLUS	map_l150_m1_e0	*	85.7143	81.8182	90.0000	97.7679	9	2	9	1	0	0.0000
jlack-gatk	INDEL	I16_PLUS	map_l150_m1_e0	het	92.3077	100.0000	85.7143	97.2973	6	0	6	1	0	0.0000
jlack-gatk	INDEL	I16_PLUS	map_l150_m1_e0	hetalt	66.6667	50.0000	100.0000	93.3333	1	1	1	0	0
jlack-gatk	INDEL	I16_PLUS	map_l150_m1_e0	homalt	80.0000	66.6667	100.0000	98.8506	2	1	2	0	0
jlack-gatk	INDEL	I6_15	map_l150_m1_e0	*	86.2745	88.0000	84.6154	95.7861	22	3	22	4	0	0.0000
jlack-gatk	INDEL	I6_15	map_l150_m1_e0	het	80.0000	80.0000	80.0000	96.4539	12	3	12	3	0	0.0000
jlack-gatk	INDEL	I6_15	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	93.3333	3	0	3	0	0
jlack-gatk	INDEL	I6_15	map_l150_m1_e0	homalt	93.3333	100.0000	87.5000	94.6309	7	0	7	1	0	0.0000
jmaeng-gatk	INDEL	C1_5	map_l150_m1_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	map_l150_m1_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	map_l150_m1_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	map_l150_m1_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	map_l150_m1_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	map_l150_m1_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	*	map_l150_m1_e0	*	95.7315	97.8326	93.7188	92.7638	1309	29	1313	88	9	10.2273
jmaeng-gatk	INDEL	*	map_l150_m1_e0	het	94.3374	98.0117	90.9287	93.7882	838	17	842	84	6	7.1429
jmaeng-gatk	INDEL	*	map_l150_m1_e0	hetalt	92.3077	85.7143	100.0000	95.5665	18	3	18	0	0
jmaeng-gatk	INDEL	*	map_l150_m1_e0	homalt	98.5854	98.0519	99.1247	88.7105	453	9	453	4	3	75.0000
jli-custom	SNP	*	map_l150_m1_e0	*	99.1511	98.8337	99.4706	71.1384	30252	357	30249	161	58	36.0248
jli-custom	SNP	*	map_l150_m1_e0	het	98.8306	98.4521	99.2121	72.9358	19017	299	19014	151	48	31.7881
jli-custom	SNP	*	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	78.4946	20	0	20	0	0
jli-custom	SNP	*	map_l150_m1_e0	homalt	99.6978	99.4855	99.9109	67.4251	11215	58	11215	10	10	100.0000
jli-custom	SNP	tv	map_l150_m1_e0	*	99.0626	98.7812	99.3456	71.0917	10779	133	10778	71	23	32.3944
jli-custom	SNP	tv	map_l150_m1_e0	het	98.7145	98.4020	99.0291	72.7212	6835	111	6834	67	19	28.3582
jli-custom	SNP	tv	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	78.4946	20	0	20	0	0
jli-custom	SNP	tv	map_l150_m1_e0	homalt	99.6698	99.4425	99.8982	67.6388	3924	22	3924	4	4	100.0000
jmaeng-gatk	INDEL	C6_15	map_l150_m1_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C6_15	map_l150_m1_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C6_15	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C6_15	map_l150_m1_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	SNP	ti	map_l150_m1_e0	*	99.2008	98.8636	99.5403	71.1664	19488	224	19486	90	35	38.8889
jli-custom	SNP	ti	map_l150_m1_e0	het	98.8959	98.4802	99.3151	73.0550	12182	188	12180	84	29	34.5238
jli-custom	SNP	ti	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	73.6842	15	0	15	0	0
jli-custom	SNP	ti	map_l150_m1_e0	homalt	99.7128	99.5087	99.9178	67.3088	7291	36	7291	6	6	100.0000
jli-custom	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	91.1001	72	1	72	0	0
jli-custom	INDEL	D6_15	map_l150_m1_e0	het	100.0000	100.0000	100.0000	92.4272	39	0	39	0	0
jli-custom	INDEL	D6_15	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	91.1111	8	0	8	0	0
jli-custom	INDEL	D6_15	map_l150_m1_e0	homalt	98.0392	96.1538	100.0000	87.7451	25	1	25	0	0
jli-custom	INDEL	C16_PLUS	map_l150_m1_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	map_l150_m1_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	map_l150_m1_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C1_5	map_l150_m1_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C1_5	map_l150_m1_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C1_5	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C1_5	map_l150_m1_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	I1_5	map_l150_m1_e0	*	98.9129	98.8142	99.0119	87.8511	500	6	501	5	2	40.0000
jli-custom	INDEL	I1_5	map_l150_m1_e0	het	98.6543	97.9933	99.3243	88.5227	293	6	294	2	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge