PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67851-67900 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 60.0000 | 95.8746 | 0 | 0 | 15 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 47.3684 | 96.0251 | 0 | 0 | 9 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.3125 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m1_e0 | * | 95.3104 | 96.2631 | 94.3764 | 89.0069 | 1288 | 50 | 1309 | 78 | 15 | 19.2308 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | het | 93.9997 | 95.9064 | 92.1674 | 89.8264 | 820 | 35 | 859 | 73 | 11 | 15.0685 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 95.2381 | 0.0000 | 0.0000 | 20 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m1_e0 | homalt | 97.9259 | 96.9697 | 98.9011 | 86.8345 | 448 | 14 | 450 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 98.3253 | 98.4190 | 98.2318 | 89.1587 | 498 | 8 | 500 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | het | 97.6577 | 97.3244 | 97.9933 | 90.1645 | 291 | 8 | 293 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.5783 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 86.5010 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | * | 99.1019 | 99.3303 | 98.8746 | 75.7599 | 30404 | 205 | 30398 | 346 | 61 | 17.6301 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | het | 98.7760 | 99.2493 | 98.3073 | 78.6499 | 19171 | 145 | 19165 | 330 | 49 | 14.8485 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 76.3158 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | homalt | 99.6712 | 99.4855 | 99.8575 | 68.3134 | 11215 | 58 | 11215 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | * | 99.1792 | 99.3202 | 99.0387 | 75.5864 | 19578 | 134 | 19574 | 190 | 36 | 18.9474 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | het | 98.8799 | 99.2158 | 98.5462 | 78.5485 | 12273 | 97 | 12269 | 181 | 29 | 16.0221 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 70.8333 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | homalt | 99.6923 | 99.5087 | 99.8767 | 68.0791 | 7291 | 36 | 7291 | 9 | 7 | 77.7778 | |
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | * | 98.9592 | 99.3402 | 98.5810 | 76.0604 | 10840 | 72 | 10838 | 156 | 25 | 16.0256 | |
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | het | 98.5918 | 99.3090 | 97.8850 | 78.8267 | 6898 | 48 | 6896 | 149 | 20 | 13.4228 | |
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 76.3158 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | homalt | 99.6318 | 99.4425 | 99.8219 | 68.7396 | 3924 | 22 | 3924 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m1_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.2083 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.2703 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6250 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.0526 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6301 | 98.6301 | 98.6301 | 92.8571 | 72 | 1 | 72 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.2775 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3614 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 89.5833 | 25 | 1 | 25 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.7828 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.1957 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.9091 | 1 | 1 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.7528 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 98.2056 | 99.0237 | 97.4008 | 89.1607 | 710 | 7 | 712 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | het | 97.7580 | 99.1701 | 96.3855 | 89.4826 | 478 | 4 | 480 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0297 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 87.4377 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | * | 97.9979 | 98.5800 | 97.4227 | 90.0883 | 1319 | 19 | 1323 | 35 | 7 | 20.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | het | 97.5150 | 98.3626 | 96.6819 | 90.6743 | 841 | 14 | 845 | 29 | 4 | 13.7931 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.2693 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | homalt | 98.9201 | 99.1342 | 98.7069 | 88.3417 | 458 | 4 | 458 | 6 | 3 | 50.0000 | |