PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67801-67850 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | * | map_l150_m1_e0 | * | 91.4460 | 84.4686 | 99.6799 | 78.7872 | 25855 | 4754 | 25849 | 83 | 39 | 46.9880 | |
| astatham-gatk | SNP | * | map_l150_m1_e0 | het | 86.2499 | 76.0872 | 99.5460 | 82.9944 | 14697 | 4619 | 14691 | 67 | 26 | 38.8060 | |
| astatham-gatk | SNP | * | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 75.9494 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l150_m1_e0 | homalt | 99.3312 | 98.8113 | 99.8566 | 68.4753 | 11139 | 134 | 11139 | 16 | 13 | 81.2500 | |
| astatham-gatk | SNP | ti | map_l150_m1_e0 | * | 91.3534 | 84.2837 | 99.7178 | 78.6410 | 16614 | 3098 | 16610 | 47 | 26 | 55.3191 | |
| astatham-gatk | SNP | ti | map_l150_m1_e0 | het | 85.9873 | 75.6508 | 99.5954 | 82.9552 | 9358 | 3012 | 9354 | 38 | 18 | 47.3684 | |
| astatham-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.3483 | 98.8263 | 99.8759 | 68.2477 | 7241 | 86 | 7241 | 9 | 8 | 88.8889 | |
| asubramanian-gatk | INDEL | * | map_l150_m1_e0 | * | 89.9819 | 85.5007 | 94.9587 | 97.6598 | 1144 | 194 | 1149 | 61 | 7 | 11.4754 | |
| asubramanian-gatk | INDEL | * | map_l150_m1_e0 | het | 86.9483 | 82.1053 | 92.3984 | 93.4997 | 702 | 153 | 705 | 58 | 6 | 10.3448 | |
| asubramanian-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 95.2607 | 19 | 2 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l150_m1_e0 | homalt | 95.2710 | 91.5584 | 99.2974 | 89.4045 | 423 | 39 | 424 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | map_l150_m1_e0 | * | 91.6254 | 84.8240 | 99.6125 | 79.0350 | 9256 | 1656 | 9254 | 36 | 13 | 36.1111 | |
| astatham-gatk | SNP | tv | map_l150_m1_e0 | het | 86.7142 | 76.8644 | 99.4596 | 83.0624 | 5339 | 1607 | 5337 | 29 | 8 | 27.5862 | |
| astatham-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 75.9494 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m1_e0 | homalt | 99.2995 | 98.7836 | 99.8207 | 68.8894 | 3898 | 48 | 3898 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.9972 | 95.6522 | 98.3806 | 89.7744 | 484 | 22 | 486 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.3587 | 92.6421 | 98.2394 | 90.9091 | 277 | 22 | 279 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2128 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 86.7676 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.3252 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.4248 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.0265 | 6 | 1 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 81.8182 | 81.8182 | 81.8182 | 97.0899 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 96.8085 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.7528 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 96.6476 | 96.3738 | 96.9231 | 89.6121 | 691 | 26 | 693 | 22 | 4 | 18.1818 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 95.4352 | 95.2282 | 95.6432 | 90.0310 | 459 | 23 | 461 | 21 | 3 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3214 | 6 | 1 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 87.5548 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6301 | 98.6301 | 98.6301 | 92.9400 | 72 | 1 | 72 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.3583 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.8046 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 89.4958 | 25 | 1 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.1761 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.4045 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |