PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67751-67800 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l150_m1_e0 | homalt | 69.0375 | 93.9394 | 54.5714 | 85.0810 | 186 | 12 | 191 | 159 | 143 | 89.9371 | |
| astatham-gatk | INDEL | * | map_l150_m1_e0 | * | 96.6569 | 96.0389 | 97.2830 | 90.5512 | 1285 | 53 | 1289 | 36 | 7 | 19.4444 | |
| astatham-gatk | INDEL | * | map_l150_m1_e0 | het | 95.3423 | 94.3860 | 96.3183 | 91.2356 | 807 | 48 | 811 | 31 | 4 | 12.9032 | |
| astatham-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.7507 | 20 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m1_e0 | homalt | 99.0270 | 99.1342 | 98.9201 | 88.5254 | 458 | 4 | 458 | 5 | 3 | 60.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | * | 39.2304 | 24.4115 | 99.8340 | 94.1489 | 4812 | 14900 | 4810 | 8 | 4 | 50.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | het | 42.4790 | 26.9846 | 99.7608 | 94.8360 | 3338 | 9032 | 3336 | 8 | 4 | 50.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 90.7407 | 5 | 10 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | homalt | 33.4015 | 20.0491 | 100.0000 | 91.6220 | 1469 | 5858 | 1469 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | * | 37.4814 | 23.0755 | 99.7622 | 94.8394 | 2518 | 8394 | 2517 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | het | 40.8243 | 25.6695 | 99.6644 | 95.4254 | 1783 | 5163 | 1782 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.6237 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | homalt | 31.2233 | 18.4997 | 100.0000 | 92.4835 | 730 | 3216 | 730 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m1_e0 | * | 38.6014 | 23.9309 | 99.7548 | 94.4087 | 7325 | 23284 | 7322 | 18 | 5 | 27.7778 | |
| asubramanian-gatk | SNP | * | map_l150_m1_e0 | het | 41.8810 | 26.5117 | 99.6495 | 95.0572 | 5121 | 14195 | 5118 | 18 | 5 | 27.7778 | |
| asubramanian-gatk | SNP | * | map_l150_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.6237 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m1_e0 | homalt | 32.6455 | 19.5068 | 100.0000 | 91.9371 | 2199 | 9074 | 2199 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 90.2430 | 87.0293 | 93.7031 | 91.7133 | 624 | 93 | 625 | 42 | 5 | 11.9048 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 88.2318 | 85.4772 | 91.1700 | 92.4108 | 412 | 70 | 413 | 40 | 4 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5000 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.4954 | 90.3509 | 99.0385 | 88.6957 | 206 | 22 | 206 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 89.6780 | 83.2016 | 97.2477 | 92.2073 | 421 | 85 | 424 | 12 | 1 | 8.3333 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 83.9718 | 75.2508 | 94.9791 | 93.8067 | 225 | 74 | 227 | 12 | 1 | 8.3333 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7143 | 9 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.1429 | 94.4444 | 100.0000 | 87.6802 | 187 | 11 | 188 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.4618 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.5517 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.3510 | 4 | 3 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 95.0454 | 91.7808 | 98.5507 | 94.0311 | 67 | 6 | 68 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 96.1039 | 94.8718 | 97.3684 | 95.3939 | 37 | 2 | 37 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.2088 | 7 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 93.8776 | 88.4615 | 100.0000 | 90.4167 | 23 | 3 | 23 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 81.8182 | 81.8182 | 81.8182 | 96.7262 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 96.3731 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 1 | 1 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6562 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 85.7143 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 98.0966 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 88.8889 | 85.7143 | 92.3077 | 97.4855 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 85.7143 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||