PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6701-6750 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | HG002complexvar | * | 99.8482 | 99.7705 | 99.9260 | 21.7021 | 245590 | 565 | 245834 | 182 | 72 | 39.5604 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | het | 99.8062 | 99.7174 | 99.8951 | 21.1944 | 150308 | 426 | 150523 | 158 | 48 | 30.3797 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | homalt | 99.9174 | 99.8549 | 99.9800 | 22.4289 | 94973 | 138 | 95001 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | * | HG002complexvar | * | 95.4305 | 94.5346 | 96.3436 | 54.3245 | 72733 | 4205 | 72356 | 2746 | 2618 | 95.3387 | |
| mlin-fermikit | INDEL | * | HG002complexvar | het | 95.8810 | 94.8801 | 96.9032 | 52.4432 | 43846 | 2366 | 43401 | 1387 | 1299 | 93.6554 | |
| mlin-fermikit | INDEL | * | HG002complexvar | hetalt | 86.4462 | 77.1560 | 98.2798 | 67.7484 | 2854 | 845 | 3028 | 53 | 52 | 98.1132 | |
| mlin-fermikit | INDEL | * | HG002complexvar | homalt | 95.7600 | 96.3222 | 95.2043 | 55.1307 | 26033 | 994 | 25927 | 1306 | 1267 | 97.0138 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | * | 98.0543 | 96.8698 | 99.2681 | 50.7658 | 4642 | 150 | 4340 | 32 | 18 | 56.2500 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | het | 98.2137 | 97.4098 | 99.0310 | 49.5355 | 2294 | 61 | 2044 | 20 | 9 | 45.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | hetalt | 96.8057 | 94.1946 | 99.5656 | 57.9927 | 1152 | 71 | 1146 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | homalt | 98.9542 | 98.5173 | 99.3950 | 43.5610 | 1196 | 18 | 1150 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | * | 99.8684 | 99.7896 | 99.9473 | 18.8678 | 752797 | 1587 | 752943 | 397 | 167 | 42.0655 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | het | 99.8358 | 99.7414 | 99.9305 | 18.3888 | 464296 | 1204 | 464515 | 323 | 94 | 29.1022 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | homalt | 99.9218 | 99.8676 | 99.9761 | 19.6026 | 288192 | 382 | 288118 | 69 | 68 | 98.5507 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | * | 97.7900 | 96.9257 | 98.6698 | 51.5393 | 5139 | 163 | 4970 | 67 | 50 | 74.6269 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | het | 98.5457 | 97.9487 | 99.1499 | 50.4465 | 3056 | 64 | 2916 | 25 | 8 | 32.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | hetalt | 94.0012 | 92.3001 | 95.7661 | 55.0113 | 935 | 78 | 950 | 42 | 42 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | homalt | 99.0937 | 98.2036 | 100.0000 | 51.0204 | 1148 | 21 | 1104 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | * | 99.3818 | 99.0798 | 99.6856 | 52.9504 | 33055 | 307 | 32342 | 102 | 66 | 64.7059 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | het | 99.3853 | 99.2028 | 99.5685 | 52.2881 | 18044 | 145 | 17305 | 75 | 44 | 58.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | hetalt | 98.0883 | 96.9293 | 99.2754 | 77.2008 | 1673 | 53 | 1918 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | homalt | 99.5439 | 99.1894 | 99.9010 | 45.4107 | 13338 | 109 | 13119 | 13 | 8 | 61.5385 | |
| mlin-fermikit | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | * | 90.8139 | 89.4568 | 92.2128 | 58.0463 | 4743 | 559 | 4784 | 404 | 381 | 94.3069 | |
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | het | 92.4085 | 90.4808 | 94.4202 | 55.5173 | 2823 | 297 | 2809 | 166 | 152 | 91.5663 | |
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | hetalt | 87.9228 | 79.5656 | 98.2415 | 48.4281 | 806 | 207 | 838 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | homalt | 89.0670 | 95.2951 | 83.6029 | 66.2028 | 1114 | 55 | 1137 | 223 | 214 | 95.9641 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | * | 84.0504 | 79.8319 | 88.7395 | 68.1648 | 1045 | 264 | 1056 | 134 | 128 | 95.5224 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | het | 86.1405 | 88.2707 | 84.1108 | 65.5276 | 587 | 78 | 577 | 109 | 105 | 96.3303 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | hetalt | 71.7549 | 56.4179 | 98.5437 | 70.9450 | 189 | 146 | 203 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | homalt | 89.7501 | 87.0550 | 92.6174 | 71.3186 | 269 | 40 | 276 | 22 | 21 | 95.4545 | |
| mlin-fermikit | INDEL | I1_5 | HG002complexvar | * | 96.3771 | 95.3032 | 97.4754 | 51.5661 | 31796 | 1567 | 31622 | 819 | 800 | 97.6801 | |
| mlin-fermikit | INDEL | I1_5 | HG002complexvar | het | 96.6423 | 95.7777 | 97.5227 | 51.7717 | 17421 | 768 | 17282 | 439 | 429 | 97.7221 | |
| mlin-fermikit | INDEL | I1_5 | HG002complexvar | hetalt | 88.8775 | 80.8806 | 98.6292 | 68.2274 | 1396 | 330 | 1439 | 20 | 20 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | HG002complexvar | homalt | 96.8973 | 96.5125 | 97.2853 | 48.2881 | 12979 | 469 | 12901 | 360 | 351 | 97.5000 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | * | 96.3667 | 95.5494 | 97.1980 | 54.2316 | 31259 | 1456 | 31081 | 896 | 836 | 93.3036 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | het | 96.8827 | 95.7525 | 98.0399 | 50.2469 | 19883 | 882 | 19757 | 395 | 351 | 88.8608 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | hetalt | 89.3834 | 81.7308 | 98.6171 | 71.1327 | 1105 | 247 | 1141 | 16 | 16 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | homalt | 96.1786 | 96.9145 | 95.4537 | 57.9255 | 10271 | 327 | 10183 | 485 | 469 | 96.7010 | |
| mlin-fermikit | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||