PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67401-67450 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | * | 59.4595 | 73.3333 | 50.0000 | 93.6047 | 11 | 4 | 11 | 11 | 2 | 18.1818 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | het | 68.9655 | 71.4286 | 66.6667 | 90.5660 | 10 | 4 | 10 | 5 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 97.1751 | 0 | 0 | 0 | 5 | 2 | 40.0000 | ||
| mlin-fermikit | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 97.9592 | 98.6301 | 97.2973 | 94.2368 | 72 | 1 | 72 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 97.5000 | 100.0000 | 95.1220 | 95.6568 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.7526 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 89.7119 | 25 | 1 | 25 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.2675 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.6292 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.1538 | 6 | 1 | 6 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | * | 80.0329 | 67.8918 | 97.4620 | 88.1625 | 20781 | 9828 | 20775 | 541 | 41 | 7.5786 | |
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | het | 84.2606 | 74.8343 | 96.4038 | 89.9614 | 14455 | 4861 | 14449 | 539 | 39 | 7.2356 | |
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.4444 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | homalt | 71.8022 | 56.0188 | 99.9683 | 79.3360 | 6315 | 4958 | 6315 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | * | 80.4694 | 68.3289 | 97.8561 | 87.7017 | 13469 | 6243 | 13465 | 295 | 34 | 11.5254 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | het | 84.7465 | 75.2789 | 96.9381 | 89.5763 | 9312 | 3058 | 9308 | 294 | 33 | 11.2245 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.1739 | 9 | 6 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | homalt | 72.2900 | 56.6125 | 99.9759 | 78.8887 | 4148 | 3179 | 4148 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8834 | 98.0237 | 95.7692 | 92.4077 | 496 | 10 | 498 | 22 | 3 | 13.6364 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.5869 | 97.3244 | 93.9103 | 93.8991 | 291 | 8 | 293 | 19 | 1 | 5.2632 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 9 | 0 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.7406 | 98.9899 | 98.4925 | 87.1030 | 196 | 2 | 196 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.5469 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.0909 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 95.1391 | 98.0474 | 92.3984 | 92.1292 | 703 | 14 | 705 | 58 | 5 | 8.6207 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 93.8151 | 98.7552 | 89.3458 | 92.9596 | 476 | 6 | 478 | 57 | 4 | 7.0175 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.4436 | 4 | 3 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.6726 | 97.8070 | 99.5536 | 87.8128 | 223 | 5 | 223 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4239 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.2549 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0645 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.4000 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 98.8950 | 0 | 0 | 2 | 0 | 0 | ||