PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67301-67350 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | * | 97.1070 | 96.6121 | 97.6070 | 79.3678 | 29572 | 1037 | 29572 | 725 | 231 | 31.8621 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | het | 96.1124 | 95.8014 | 96.4254 | 81.4447 | 18505 | 811 | 18505 | 686 | 205 | 29.8834 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | homalt | 98.9052 | 98.1726 | 99.6488 | 74.4202 | 11067 | 206 | 11067 | 39 | 26 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | * | 96.5147 | 94.1704 | 98.9788 | 84.7782 | 1260 | 78 | 1260 | 13 | 3 | 23.0769 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | het | 95.1397 | 91.5789 | 98.9886 | 81.0946 | 783 | 72 | 783 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.5889 | 18 | 3 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | homalt | 99.1349 | 99.3506 | 98.9201 | 86.9172 | 459 | 3 | 458 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | * | 93.8197 | 91.5020 | 96.2578 | 89.2801 | 463 | 43 | 463 | 18 | 11 | 61.1111 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | het | 92.6746 | 90.9699 | 94.4444 | 91.6035 | 272 | 27 | 272 | 16 | 9 | 56.2500 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.6982 | 96.4646 | 98.9637 | 81.7408 | 191 | 7 | 191 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | * | 52.6316 | 45.4545 | 62.5000 | 84.3137 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | het | 71.4286 | 83.3333 | 62.5000 | 81.3953 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 66.6667 | 54.5455 | 85.7143 | 85.4167 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 72.7273 | 66.6667 | 80.0000 | 80.0000 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.3740 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 98.7500 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.1818 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0519 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 90.9836 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 88.1188 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.1392 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | * | 96.8582 | 94.5607 | 99.2701 | 82.3545 | 678 | 39 | 680 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | het | 95.8130 | 92.5311 | 99.3363 | 77.5012 | 446 | 36 | 449 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.5765 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3435 | 99.5614 | 99.1266 | 85.6156 | 227 | 1 | 227 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6111 | 97.2603 | 100.0000 | 88.1956 | 71 | 2 | 70 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7013 | 97.4359 | 100.0000 | 88.2353 | 38 | 1 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.8367 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 86.0465 | 25 | 1 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 91.6667 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 84.6154 | 78.5714 | 91.6667 | 88.3495 | 11 | 3 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8646 | 94.8617 | 98.9540 | 85.0251 | 480 | 26 | 473 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1158 | 91.3043 | 99.2593 | 81.1453 | 273 | 26 | 268 | 2 | 0 | 0.0000 | |