PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66901-66950 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | map_l150_m1_e0 | * | 96.2243 | 96.2631 | 96.1855 | 90.5619 | 1288 | 50 | 1286 | 51 | 9 | 17.6471 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | het | 95.1716 | 95.6725 | 94.6759 | 91.3591 | 818 | 37 | 818 | 46 | 5 | 10.8696 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.9555 | 17 | 4 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m1_e0 | homalt | 98.4759 | 98.0519 | 98.9035 | 88.0940 | 453 | 9 | 451 | 5 | 4 | 80.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 98.0769 | 0 | 11 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m1_e0 | * | 22.2222 | 13.3333 | 66.6667 | 97.7099 | 2 | 13 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m1_e0 | het | 12.5000 | 7.1429 | 50.0000 | 98.1481 | 1 | 13 | 1 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | * | 76.6610 | 62.7615 | 98.4683 | 90.0131 | 450 | 267 | 450 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | het | 79.8048 | 67.2199 | 98.1873 | 91.0516 | 324 | 158 | 325 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.0892 | 4 | 3 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | homalt | 69.5157 | 53.5088 | 99.1870 | 82.9167 | 122 | 106 | 122 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | * | 54.9020 | 38.3562 | 96.5517 | 93.4389 | 28 | 45 | 28 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | het | 43.1373 | 28.2051 | 91.6667 | 96.4072 | 11 | 28 | 11 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 89.8305 | 6 | 2 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | homalt | 59.4595 | 42.3077 | 100.0000 | 77.5510 | 11 | 15 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | SNP | tv | map_l150_m1_e0 | * | 79.1583 | 66.8988 | 96.9190 | 88.8068 | 7300 | 3612 | 7298 | 232 | 8 | 3.4483 | |
| ckim-gatk | SNP | tv | map_l150_m1_e0 | het | 83.3287 | 73.7979 | 95.6863 | 90.3850 | 5126 | 1820 | 5124 | 231 | 8 | 3.4632 | |
| ckim-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 93.8202 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m1_e0 | homalt | 70.8020 | 54.8150 | 99.9538 | 81.0192 | 2163 | 1783 | 2163 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | map_l150_m1_e0 | * | 74.6172 | 60.0897 | 98.4088 | 90.7075 | 804 | 534 | 804 | 13 | 5 | 38.4615 | |
| ckim-isaac | INDEL | * | map_l150_m1_e0 | het | 77.5665 | 64.0936 | 98.2111 | 92.0336 | 548 | 307 | 549 | 10 | 4 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.9807 | 14 | 7 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l150_m1_e0 | homalt | 68.4583 | 52.3810 | 98.7755 | 83.8391 | 242 | 220 | 242 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | * | 96.9396 | 97.3501 | 96.5326 | 89.6646 | 698 | 19 | 696 | 25 | 3 | 12.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | het | 96.3064 | 97.5104 | 95.1318 | 90.1420 | 470 | 12 | 469 | 24 | 2 | 8.3333 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.9381 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.8953 | 98.2456 | 99.5536 | 87.4228 | 224 | 4 | 223 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | * | 96.5517 | 95.8904 | 97.2222 | 93.0165 | 70 | 3 | 70 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | het | 97.5000 | 100.0000 | 95.1220 | 93.8806 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |