PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66801-66850 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 36.5854 | 95.8959 | 0 | 0 | 30 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 27.7778 | 95.8501 | 0 | 0 | 20 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1977 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 31.5789 | 20.0000 | 75.0000 | 94.3662 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | het | 33.3333 | 21.4286 | 75.0000 | 94.0299 | 3 | 11 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | map_l150_m1_e0 | * | 96.7874 | 96.6213 | 96.9540 | 76.8102 | 19046 | 666 | 19034 | 598 | 159 | 26.5886 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | het | 95.9987 | 96.7583 | 95.2510 | 80.3175 | 11969 | 401 | 11974 | 597 | 158 | 26.4657 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m1_e0 | homalt | 98.1515 | 96.3832 | 99.9858 | 66.0349 | 7062 | 265 | 7060 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | map_l150_m1_e0 | * | 96.2415 | 96.9483 | 95.5449 | 77.7956 | 10579 | 333 | 10573 | 493 | 81 | 16.4300 | |
| cchapple-custom | SNP | tv | map_l150_m1_e0 | het | 95.1002 | 97.0775 | 93.2019 | 81.0524 | 6743 | 203 | 6759 | 493 | 81 | 16.4300 | |
| cchapple-custom | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m1_e0 | homalt | 98.3252 | 96.7055 | 100.0000 | 67.0155 | 3816 | 130 | 3814 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 11.1111 | 98.2387 | 0 | 0 | 1 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 99.0385 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 14.2857 | 97.6898 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l150_m1_e0 | * | 65.1609 | 58.8939 | 72.9205 | 92.7722 | 788 | 550 | 789 | 293 | 182 | 62.1160 | |
| ciseli-custom | INDEL | * | map_l150_m1_e0 | het | 66.7585 | 62.9240 | 71.0907 | 93.2928 | 538 | 317 | 541 | 220 | 129 | 58.6364 | |
| ciseli-custom | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 1 | 20 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l150_m1_e0 | homalt | 63.4966 | 53.8961 | 77.2586 | 91.1399 | 249 | 213 | 248 | 73 | 53 | 72.6027 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 74.0933 | 68.7587 | 80.3252 | 92.6268 | 493 | 224 | 494 | 121 | 55 | 45.4545 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 72.3508 | 65.5602 | 80.7107 | 93.7629 | 316 | 166 | 318 | 76 | 19 | 25.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 78.3964 | 77.1930 | 79.6380 | 89.0810 | 176 | 52 | 176 | 45 | 36 | 80.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 60.8696 | 46.6667 | 87.5000 | 96.0784 | 7 | 8 | 7 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.6937 | 7 | 7 | 7 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.9247 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ckim-dragen | SNP | ti | map_l150_m1_e0 | * | 98.2015 | 98.8636 | 97.5482 | 76.3868 | 19488 | 224 | 19495 | 490 | 66 | 13.4694 | |
| ckim-dragen | SNP | ti | map_l150_m1_e0 | het | 97.4739 | 98.7146 | 96.2639 | 80.0619 | 12211 | 159 | 12213 | 474 | 51 | 10.7595 | |
| ckim-dragen | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.7692 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m1_e0 | homalt | 99.4455 | 99.1129 | 99.7803 | 65.1947 | 7262 | 65 | 7267 | 16 | 15 | 93.7500 | |
| ckim-dragen | INDEL | I6_15 | map_l150_m1_e0 | * | 97.9592 | 96.0000 | 100.0000 | 95.0719 | 24 | 1 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m1_e0 | het | 96.5517 | 93.3333 | 100.0000 | 95.4098 | 14 | 1 | 14 | 0 | 0 | ||