PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66651-66700 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l150_m1_e0 | * | 92.4318 | 96.0278 | 89.0953 | 81.2252 | 18929 | 783 | 18751 | 2295 | 187 | 8.1482 | |
| gduggal-snapvard | SNP | ti | map_l150_m1_e0 | het | 89.7218 | 96.4268 | 83.8886 | 83.9806 | 11928 | 442 | 11835 | 2273 | 169 | 7.4351 | |
| gduggal-snapvard | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l150_m1_e0 | homalt | 97.5731 | 95.5507 | 99.6829 | 71.1266 | 7001 | 326 | 6916 | 22 | 18 | 81.8182 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | * | 91.4337 | 96.5909 | 86.7993 | 81.5080 | 10540 | 372 | 10514 | 1599 | 100 | 6.2539 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | het | 88.3469 | 97.2934 | 80.9072 | 84.0922 | 6758 | 188 | 6742 | 1591 | 94 | 5.9082 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | homalt | 97.7764 | 95.8439 | 99.7884 | 71.1912 | 3782 | 164 | 3772 | 8 | 6 | 75.0000 | |
| ghariani-varprowl | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | * | 92.1558 | 96.2756 | 88.3741 | 81.2786 | 29469 | 1140 | 29091 | 3827 | 280 | 7.3164 | |
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | het | 89.3113 | 96.7385 | 82.9433 | 83.9813 | 18686 | 630 | 18464 | 3797 | 256 | 6.7422 | |
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | homalt | 97.6436 | 95.6533 | 99.7185 | 71.0895 | 10783 | 490 | 10627 | 30 | 24 | 80.0000 | |
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | * | 60.8583 | 72.0000 | 52.7027 | 87.7888 | 18 | 7 | 39 | 35 | 27 | 77.1429 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | het | 63.8563 | 93.3333 | 48.5294 | 87.8571 | 14 | 1 | 33 | 35 | 27 | 77.1429 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 86.9565 | 2 | 5 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l150_m1_e0 | * | 90.8174 | 94.2451 | 87.6303 | 95.0045 | 1261 | 77 | 1261 | 178 | 51 | 28.6517 | |
| ghariani-varprowl | INDEL | * | map_l150_m1_e0 | het | 89.9408 | 97.7778 | 83.2669 | 93.2001 | 836 | 19 | 836 | 168 | 48 | 28.5714 | |
| ghariani-varprowl | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 21 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l150_m1_e0 | homalt | 94.7603 | 91.9913 | 97.7011 | 86.5533 | 425 | 37 | 425 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.0147 | 97.4308 | 98.6056 | 88.2104 | 493 | 13 | 495 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.1183 | 95.6522 | 98.6301 | 89.0019 | 286 | 13 | 288 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 85.7548 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | * | 99.3490 | 99.1071 | 99.5921 | 73.5929 | 19536 | 176 | 19532 | 80 | 23 | 28.7500 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | het | 99.0951 | 98.7227 | 99.4704 | 74.9167 | 12212 | 158 | 12208 | 65 | 17 | 26.1538 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.5625 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | homalt | 99.7748 | 99.7543 | 99.7952 | 71.0227 | 7309 | 18 | 7309 | 15 | 6 | 40.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | * | 99.3066 | 99.0927 | 99.5213 | 73.8197 | 10813 | 99 | 10811 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | het | 99.0753 | 98.7331 | 99.4200 | 74.8128 | 6858 | 88 | 6856 | 40 | 10 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | homalt | 99.7086 | 99.7212 | 99.6960 | 71.8212 | 3935 | 11 | 3935 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | * | 97.9254 | 98.5800 | 97.2794 | 89.7079 | 1319 | 19 | 1323 | 37 | 6 | 16.2162 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | het | 97.3465 | 98.3626 | 96.3512 | 90.4715 | 841 | 14 | 845 | 32 | 3 | 9.3750 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9749 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | homalt | 99.0270 | 99.1342 | 98.9201 | 87.1816 | 458 | 4 | 458 | 5 | 3 | 60.0000 | |