PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66601-66650 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | * | 91.7958 | 89.0029 | 94.7697 | 85.0160 | 9712 | 1200 | 9712 | 536 | 286 | 53.3582 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | het | 91.7565 | 91.2612 | 92.2573 | 87.5714 | 6339 | 607 | 6339 | 532 | 282 | 53.0075 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 88.6228 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | homalt | 91.9496 | 85.0988 | 100.0000 | 74.0535 | 3358 | 588 | 3358 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | * | 82.5979 | 77.6680 | 88.1960 | 95.0708 | 393 | 113 | 396 | 53 | 2 | 3.7736 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | het | 81.0028 | 77.5920 | 84.7273 | 95.7225 | 232 | 67 | 233 | 42 | 1 | 2.3810 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.3392 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | homalt | 86.3828 | 79.7980 | 94.1520 | 92.3181 | 158 | 40 | 161 | 10 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | * | 84.8673 | 92.3767 | 78.4870 | 90.4884 | 1236 | 102 | 1660 | 455 | 138 | 30.3297 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | het | 82.1183 | 96.2573 | 71.6010 | 91.6254 | 823 | 32 | 1127 | 447 | 132 | 29.5302 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 52.3810 | 0.0000 | 0.0000 | 11 | 10 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | homalt | 92.4102 | 87.0130 | 98.5213 | 84.2778 | 402 | 60 | 533 | 8 | 6 | 75.0000 | |
| gduggal-snapplat | INDEL | I16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | * | 92.9132 | 90.4018 | 95.5681 | 83.3799 | 17820 | 1892 | 17833 | 827 | 469 | 56.7110 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | het | 92.8712 | 92.3848 | 93.3627 | 86.3201 | 11428 | 942 | 11450 | 814 | 456 | 56.0197 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | hetalt | 81.2500 | 86.6667 | 76.4706 | 83.4951 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | homalt | 93.0222 | 87.0616 | 99.8589 | 71.6753 | 6379 | 948 | 6370 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | * | 13.3333 | 8.0000 | 40.0000 | 97.7974 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | het | 10.5263 | 6.6667 | 25.0000 | 96.8992 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 98.4127 | 1 | 6 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | * | 97.5871 | 96.6368 | 98.5562 | 87.8193 | 1293 | 45 | 1297 | 19 | 4 | 21.0526 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | het | 96.9158 | 95.4386 | 98.4394 | 87.9118 | 816 | 39 | 820 | 13 | 1 | 7.6923 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9495 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | homalt | 98.8108 | 98.9177 | 98.7041 | 86.8354 | 457 | 5 | 457 | 6 | 3 | 50.0000 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | * | 96.9968 | 98.4146 | 95.6193 | 80.2097 | 10739 | 173 | 10739 | 492 | 89 | 18.0894 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | het | 96.2185 | 98.9058 | 93.6733 | 82.5202 | 6870 | 76 | 6870 | 464 | 74 | 15.9483 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | homalt | 98.6612 | 98.0487 | 99.2815 | 73.6565 | 3869 | 77 | 3869 | 28 | 15 | 53.5714 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 90.9091 | 100.0000 | 83.3333 | 94.8571 | 15 | 0 | 15 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 93.4959 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.7179 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8825 | 96.6527 | 99.1441 | 85.9378 | 693 | 24 | 695 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3679 | 95.8506 | 98.9339 | 85.2423 | 462 | 20 | 464 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3913 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 85.6690 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||