PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6601-6650 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | * | 91.7545 | 85.9392 | 98.4139 | 61.1958 | 28115 | 4600 | 28045 | 452 | 321 | 71.0177 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | het | 91.4572 | 85.1047 | 98.8344 | 59.4901 | 17672 | 3093 | 17637 | 208 | 101 | 48.5577 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | hetalt | 80.5939 | 70.0444 | 94.8847 | 81.8132 | 947 | 405 | 946 | 51 | 50 | 98.0392 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | homalt | 93.6134 | 89.6018 | 98.0010 | 59.6110 | 9496 | 1102 | 9462 | 193 | 170 | 88.0829 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | * | 83.5998 | 73.9721 | 96.1087 | 66.0264 | 3922 | 1380 | 3927 | 159 | 104 | 65.4088 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | het | 81.8591 | 70.8654 | 96.8901 | 67.2923 | 2211 | 909 | 2212 | 71 | 24 | 33.8028 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | hetalt | 82.3891 | 72.0632 | 96.1691 | 62.5248 | 730 | 283 | 728 | 29 | 27 | 93.1034 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | homalt | 88.8329 | 83.9179 | 94.3595 | 65.4443 | 981 | 188 | 987 | 59 | 53 | 89.8305 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | * | 72.2938 | 57.9068 | 96.1929 | 69.4455 | 758 | 551 | 758 | 30 | 22 | 73.3333 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | het | 60.5561 | 44.2105 | 96.0784 | 72.5561 | 294 | 371 | 294 | 12 | 5 | 41.6667 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | hetalt | 77.0889 | 63.2836 | 98.5981 | 68.1548 | 212 | 123 | 211 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | homalt | 87.5090 | 81.5534 | 94.4030 | 66.1616 | 252 | 57 | 253 | 15 | 14 | 93.3333 | |
| gduggal-bwaplat | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | * | 76.5914 | 63.4206 | 96.6667 | 72.4490 | 1042 | 601 | 1044 | 36 | 23 | 63.8889 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | het | 74.0091 | 59.8013 | 97.0717 | 73.7610 | 662 | 445 | 663 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | hetalt | 77.8589 | 64.7773 | 97.5610 | 66.3244 | 160 | 87 | 160 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | homalt | 84.4618 | 76.1246 | 94.8498 | 71.9277 | 220 | 69 | 221 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | * | 90.8863 | 84.3874 | 98.4697 | 61.0933 | 64926 | 12012 | 64799 | 1007 | 684 | 67.9245 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | het | 89.8971 | 82.6214 | 98.5779 | 61.4508 | 38181 | 8031 | 38126 | 550 | 282 | 51.2727 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | hetalt | 79.9153 | 68.2076 | 96.4751 | 78.0617 | 2523 | 1176 | 2518 | 92 | 88 | 95.6522 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | homalt | 93.8564 | 89.6215 | 98.5114 | 56.9159 | 24222 | 2805 | 24155 | 365 | 314 | 86.0274 | |
| gduggal-bwaplat | INDEL | C1_5 | HG002complexvar | * | 42.8571 | 100.0000 | 3 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | HG002complexvar | het | 42.8571 | 100.0000 | 3 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | HG002complexvar | * | 75.6960 | 71.3329 | 80.6276 | 65.0203 | 1172 | 471 | 1182 | 284 | 273 | 96.1268 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002complexvar | het | 82.6837 | 86.0885 | 79.5380 | 63.2839 | 953 | 154 | 964 | 248 | 240 | 96.7742 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.8097 | 0.0000 | 0.0000 | 2 | 245 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | HG002complexvar | homalt | 80.0982 | 75.0865 | 85.8268 | 71.4607 | 217 | 72 | 218 | 36 | 33 | 91.6667 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | * | 93.8573 | 92.4805 | 95.2757 | 55.2360 | 30255 | 2460 | 30130 | 1494 | 1377 | 92.1687 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | het | 95.6155 | 96.8360 | 94.4254 | 57.0236 | 20108 | 657 | 20072 | 1185 | 1127 | 95.1055 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 1.9970 | 0.0000 | 0.0000 | 27 | 1325 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | homalt | 96.2485 | 95.4897 | 97.0194 | 51.0621 | 10120 | 478 | 10058 | 309 | 250 | 80.9061 | |
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | * | 74.6372 | 70.9355 | 78.7466 | 57.5873 | 3761 | 1541 | 3757 | 1014 | 966 | 95.2663 | |
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | het | 82.3223 | 90.1603 | 75.7381 | 57.2412 | 2813 | 307 | 2822 | 904 | 873 | 96.5708 | |
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 1.5795 | 0.0000 | 0.0000 | 16 | 997 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | homalt | 84.3192 | 79.7263 | 89.4737 | 58.7771 | 932 | 237 | 935 | 110 | 93 | 84.5455 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | * | 64.1165 | 56.5317 | 74.0519 | 63.2294 | 740 | 569 | 742 | 260 | 258 | 99.2308 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | het | 71.5885 | 75.0376 | 68.4426 | 63.7803 | 499 | 166 | 501 | 231 | 229 | 99.1342 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.8955 | 0.0000 | 0.0000 | 3 | 332 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | homalt | 82.6907 | 77.0227 | 89.2593 | 61.6477 | 238 | 71 | 241 | 29 | 29 | 100.0000 | |
| jpowers-varprowl | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||