PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66051-66100 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1176 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | homalt | 98.3607 | 97.1386 | 99.6139 | 76.6034 | 1290 | 38 | 1290 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | * | 98.3003 | 98.2955 | 98.3051 | 91.4286 | 173 | 3 | 174 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | het | 98.0997 | 97.1698 | 99.0476 | 92.0814 | 103 | 3 | 104 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 96.7480 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.9610 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | * | 98.4495 | 98.1632 | 98.7374 | 78.1997 | 11811 | 221 | 11808 | 151 | 101 | 66.8874 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | het | 98.3050 | 98.2620 | 98.3480 | 79.4809 | 7802 | 138 | 7799 | 131 | 82 | 62.5954 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1176 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | homalt | 98.7551 | 97.9702 | 99.5527 | 75.0450 | 4006 | 83 | 4006 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | * | 98.6405 | 98.3081 | 98.9751 | 78.2174 | 7728 | 133 | 7726 | 80 | 57 | 71.2500 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | het | 98.4858 | 98.2735 | 98.6990 | 79.8611 | 5009 | 88 | 5007 | 66 | 44 | 66.6667 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 92.8571 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | homalt | 98.9435 | 98.3702 | 99.5236 | 74.2304 | 2716 | 45 | 2716 | 13 | 12 | 92.3077 | |
| qzeng-custom | SNP | tv | map_l150_m0_e0 | * | 79.1205 | 68.3277 | 93.9624 | 92.1942 | 2852 | 1322 | 2848 | 183 | 152 | 83.0601 | |
| qzeng-custom | SNP | tv | map_l150_m0_e0 | het | 79.7044 | 70.2075 | 92.1723 | 93.6869 | 1996 | 847 | 1990 | 169 | 138 | 81.6568 | |
| qzeng-custom | SNP | tv | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m0_e0 | homalt | 77.7789 | 64.3072 | 98.3908 | 80.7905 | 854 | 474 | 856 | 14 | 14 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 80.7692 | 75.0000 | 87.5000 | 96.5517 | 24 | 8 | 28 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 80.9816 | 75.0000 | 88.0000 | 96.8394 | 15 | 5 | 22 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 4 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 77.9221 | 71.4286 | 85.7143 | 94.8905 | 5 | 2 | 6 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | * | 75.4274 | 62.9239 | 94.1324 | 92.2685 | 7571 | 4461 | 7492 | 467 | 396 | 84.7966 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | het | 75.9917 | 64.6851 | 92.0882 | 93.9068 | 5136 | 2804 | 5098 | 438 | 367 | 83.7900 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m0_e0 | homalt | 74.2731 | 59.5011 | 98.8021 | 79.7981 | 2433 | 1656 | 2392 | 29 | 29 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 73.1707 | 75.0000 | 71.4286 | 95.5975 | 3 | 1 | 5 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.5357 | 2 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 73.9830 | 60.2273 | 95.8824 | 96.2121 | 106 | 70 | 163 | 7 | 4 | 57.1429 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 74.5771 | 61.3208 | 95.1456 | 97.1594 | 65 | 41 | 98 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 73.9161 | 59.7015 | 97.0149 | 91.4650 | 40 | 27 | 65 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 36.3636 | 25.0000 | 66.6667 | 96.8750 | 2 | 6 | 10 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 36.3636 | 25.0000 | 66.6667 | 97.5936 | 1 | 3 | 6 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 36.3636 | 25.0000 | 66.6667 | 92.1053 | 1 | 3 | 4 | 2 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l150_m0_e0 | * | 73.3597 | 60.0560 | 94.2346 | 92.3897 | 4721 | 3140 | 4691 | 287 | 246 | 85.7143 | |
| qzeng-custom | SNP | ti | map_l150_m0_e0 | het | 73.7997 | 61.6049 | 92.0141 | 94.1071 | 3140 | 1957 | 3134 | 272 | 231 | 84.9265 | |
| qzeng-custom | SNP | ti | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.8750 | 2 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m0_e0 | homalt | 72.5105 | 57.1894 | 99.0446 | 79.2025 | 1579 | 1182 | 1555 | 15 | 15 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | * | 96.5844 | 96.1089 | 97.0646 | 99.2093 | 494 | 20 | 496 | 15 | 5 | 33.3333 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | het | 96.0441 | 95.6012 | 96.4912 | 91.7411 | 326 | 15 | 330 | 12 | 2 | 16.6667 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 97.0414 | 7 | 2 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 90.1855 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |