PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65901-65950 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 82.3529 | 100.0000 | 70.0000 | 97.4937 | 7 | 0 | 7 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.1338 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 95.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 89.7284 | 97.9239 | 82.7988 | 93.2798 | 283 | 6 | 284 | 59 | 1 | 1.6949 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 86.3303 | 98.0198 | 77.1318 | 93.8278 | 198 | 4 | 199 | 59 | 1 | 1.6949 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0583 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8095 | 97.6471 | 100.0000 | 89.8904 | 83 | 2 | 83 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 92.7536 | 100.0000 | 86.4865 | 94.8611 | 32 | 0 | 32 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 90.9091 | 100.0000 | 83.3333 | 95.6522 | 20 | 0 | 20 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 90.9091 | 100.0000 | 83.3333 | 88.6792 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9130 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | * | 99.0651 | 99.0177 | 99.1125 | 80.0536 | 4133 | 41 | 4132 | 37 | 3 | 8.1081 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | het | 98.8723 | 98.6986 | 99.0466 | 80.7883 | 2806 | 37 | 2805 | 27 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | homalt | 99.4741 | 99.6988 | 99.2504 | 78.1634 | 1324 | 4 | 1324 | 10 | 3 | 30.0000 | |
| jlack-gatk | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | * | map_l150_m0_e0 | * | 91.3832 | 97.6654 | 85.8603 | 94.2048 | 502 | 12 | 504 | 83 | 3 | 3.6145 | |
| jlack-gatk | INDEL | * | map_l150_m0_e0 | het | 88.0882 | 97.0674 | 80.6295 | 94.9157 | 331 | 10 | 333 | 80 | 1 | 1.2500 | |
| jlack-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.7368 | 100.0000 | 90.0000 | 94.8187 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.7805 | 98.7805 | 98.7805 | 90.9542 | 162 | 2 | 162 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 94.2029 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 91.9192 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | * | 98.2857 | 97.7273 | 98.8506 | 91.7103 | 172 | 4 | 172 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6077 | 96.2264 | 99.0291 | 92.6795 | 102 | 4 | 102 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9072 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.5714 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 95.7219 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 96.8254 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 4 | 0 | 4 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | * | 98.5596 | 97.5316 | 99.6095 | 77.4194 | 11735 | 297 | 11735 | 46 | 22 | 47.8261 | |
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | het | 98.0583 | 96.6751 | 99.4816 | 79.2753 | 7676 | 264 | 7676 | 40 | 17 | 42.5000 | |
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | homalt | 99.5215 | 99.1930 | 99.8523 | 72.7346 | 4056 | 33 | 4056 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 92.2524 | 90.6250 | 93.9394 | 93.7262 | 29 | 3 | 31 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | het | 95.4148 | 95.0000 | 95.8333 | 93.3148 | 19 | 1 | 23 | 1 | 0 | 0.0000 | |