PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65701-65750 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.7480 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 94.2029 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | * | map_l150_m0_e0 | * | 63.1351 | 56.8093 | 71.0462 | 94.9719 | 292 | 222 | 292 | 119 | 60 | 50.4202 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | het | 64.8517 | 61.2903 | 68.8525 | 95.2903 | 209 | 132 | 210 | 95 | 45 | 47.3684 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | map_l150_m0_e0 | homalt | 61.1885 | 50.6098 | 77.3585 | 93.7537 | 83 | 81 | 82 | 24 | 15 | 62.5000 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | * | 95.9984 | 95.3950 | 96.6095 | 81.4997 | 7499 | 362 | 7494 | 263 | 77 | 29.2776 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | het | 95.1985 | 95.5072 | 94.8918 | 84.4938 | 4868 | 229 | 4867 | 262 | 76 | 29.0076 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m0_e0 | homalt | 97.5139 | 95.1829 | 99.9619 | 70.3118 | 2628 | 133 | 2627 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | * | 97.4708 | 97.4708 | 97.4708 | 91.2896 | 501 | 13 | 501 | 13 | 4 | 30.7692 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | het | 97.0674 | 97.0674 | 97.0674 | 91.5678 | 331 | 10 | 331 | 10 | 1 | 10.0000 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.5556 | 8 | 1 | 8 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 90.1610 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | * | 92.3966 | 97.9875 | 87.4091 | 87.6580 | 4090 | 84 | 4089 | 589 | 40 | 6.7912 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | het | 89.8651 | 98.2765 | 82.7801 | 89.5464 | 2794 | 49 | 2793 | 581 | 34 | 5.8520 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.7368 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | homalt | 98.4393 | 97.3645 | 99.5381 | 76.5184 | 1293 | 35 | 1293 | 6 | 4 | 66.6667 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | * | 94.8167 | 98.1046 | 91.7420 | 86.3569 | 7712 | 149 | 7710 | 694 | 68 | 9.7983 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | het | 92.9137 | 98.4304 | 87.9825 | 88.8885 | 5017 | 80 | 5015 | 685 | 60 | 8.7591 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 91.6667 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | homalt | 98.6081 | 97.5009 | 99.7406 | 73.6452 | 2692 | 69 | 2692 | 7 | 6 | 85.7143 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.3607 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 98.2857 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.1935 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 97.4277 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 98.2533 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.0299 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l150_m0_e0 | * | 93.9698 | 98.0635 | 90.2042 | 86.8496 | 11799 | 233 | 11796 | 1281 | 106 | 8.2748 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | het | 91.7997 | 98.3753 | 86.0480 | 89.1426 | 7811 | 129 | 7808 | 1266 | 94 | 7.4250 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.7368 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | homalt | 98.5532 | 97.4566 | 99.6748 | 74.6529 | 3985 | 104 | 3985 | 13 | 10 | 76.9231 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 94.4979 | 97.1591 | 91.9786 | 94.4724 | 171 | 5 | 172 | 15 | 2 | 13.3333 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 91.8714 | 95.2830 | 88.6957 | 95.6977 | 101 | 5 | 102 | 13 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6292 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8889 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | * | 94.4555 | 97.4708 | 91.6211 | 94.8011 | 501 | 13 | 503 | 46 | 4 | 8.6957 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | het | 92.7708 | 97.3607 | 88.5942 | 95.5715 | 332 | 9 | 334 | 43 | 1 | 2.3256 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.6757 | 8 | 1 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 91.1923 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |
| jli-custom | SNP | * | map_l150_m0_e0 | * | 98.7204 | 98.1051 | 99.3435 | 75.0933 | 11804 | 228 | 11804 | 78 | 29 | 37.1795 | |
| jli-custom | SNP | * | map_l150_m0_e0 | het | 98.2666 | 97.4559 | 99.0908 | 76.5432 | 7738 | 202 | 7738 | 71 | 22 | 30.9859 | |
| jli-custom | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.1765 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | SNP | * | map_l150_m0_e0 | homalt | 99.5955 | 99.3641 | 99.8280 | 71.6988 | 4063 | 26 | 4063 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||