PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65651-65700 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.4072 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 95.0495 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 96.1039 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | * | 96.5632 | 96.0227 | 97.1098 | 92.4056 | 169 | 7 | 168 | 5 | 2 | 40.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | het | 95.6938 | 94.3396 | 97.0874 | 93.7764 | 100 | 6 | 100 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.5517 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 100.0000 | 97.0588 | 87.9646 | 67 | 0 | 66 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | * | 96.2329 | 97.2318 | 95.2542 | 91.7736 | 281 | 8 | 281 | 14 | 2 | 14.2857 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | het | 95.6311 | 97.5248 | 93.8095 | 92.1023 | 197 | 5 | 197 | 13 | 1 | 7.6923 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.8235 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.0238 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D16_PLUS | map_l150_m0_e0 | * | 82.3529 | 100.0000 | 70.0000 | 97.6581 | 7 | 0 | 7 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m0_e0 | het | 82.3529 | 100.0000 | 70.0000 | 96.8944 | 7 | 0 | 7 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 50.0000 | 99.2701 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 50.0000 | 98.7013 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | map_l150_m0_e0 | * | 95.4922 | 95.9751 | 95.0142 | 82.7299 | 4006 | 168 | 4002 | 210 | 43 | 20.4762 | |
| cchapple-custom | SNP | tv | map_l150_m0_e0 | het | 94.6151 | 96.4122 | 92.8838 | 85.0097 | 2741 | 102 | 2741 | 210 | 43 | 20.4762 | |
| cchapple-custom | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m0_e0 | homalt | 97.4517 | 95.0301 | 100.0000 | 73.1873 | 1262 | 66 | 1261 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 71.0670 | 65.7439 | 77.3279 | 94.6386 | 190 | 99 | 191 | 56 | 18 | 32.1429 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 69.0619 | 63.3663 | 75.8824 | 95.3892 | 128 | 74 | 129 | 41 | 7 | 17.0732 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 76.5432 | 72.9412 | 80.5195 | 91.6304 | 62 | 23 | 62 | 15 | 11 | 73.3333 | |