PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65601-65650 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.2880 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 94.2308 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 94.8470 | 96.1938 | 93.5374 | 90.3764 | 278 | 11 | 275 | 19 | 3 | 15.7895 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 94.2515 | 97.0297 | 91.6279 | 90.6318 | 196 | 6 | 197 | 18 | 2 | 11.1111 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 96.3707 | 94.1176 | 98.7342 | 89.6053 | 80 | 5 | 78 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 94.4299 | 96.8750 | 92.1053 | 92.2607 | 31 | 1 | 35 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 96.5517 | 100.0000 | 93.3333 | 92.1875 | 20 | 0 | 28 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 4 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 92.5234 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.6825 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 57.1429 | 50.0000 | 66.6667 | 98.0645 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 95.8387 | 97.7273 | 94.0217 | 94.6543 | 172 | 4 | 173 | 11 | 2 | 18.1818 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 94.0471 | 96.2264 | 91.9643 | 95.8884 | 102 | 4 | 103 | 9 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.5224 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 89.4009 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.8365 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.2810 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | SNP | ti | map_l150_m0_e0 | * | 72.8820 | 58.1733 | 97.5459 | 92.0553 | 4573 | 3288 | 4571 | 115 | 19 | 16.5217 | |
| ckim-gatk | SNP | ti | map_l150_m0_e0 | het | 76.3401 | 63.1156 | 96.5755 | 93.3356 | 3217 | 1880 | 3215 | 114 | 18 | 15.7895 | |
| ckim-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.2143 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l150_m0_e0 | homalt | 65.8246 | 49.0764 | 99.9263 | 84.8914 | 1355 | 1406 | 1355 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.3108 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 98.0892 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.2424 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 93.6362 | 98.9619 | 88.8545 | 93.9851 | 286 | 3 | 287 | 36 | 1 | 2.7778 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 91.5697 | 99.0099 | 85.1695 | 94.5522 | 200 | 2 | 201 | 35 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0654 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.7626 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 95.5224 | 100.0000 | 91.4286 | 95.5013 | 32 | 0 | 32 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 93.0233 | 100.0000 | 86.9565 | 96.0276 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.2281 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.0704 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 97.4922 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.8166 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 96.0526 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l150_m0_e0 | * | 72.2501 | 57.4634 | 97.2832 | 92.5200 | 6914 | 5118 | 6911 | 193 | 26 | 13.4715 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | het | 75.5141 | 62.1285 | 96.2515 | 93.6797 | 4933 | 3007 | 4930 | 192 | 25 | 13.0208 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7952 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l150_m0_e0 | homalt | 65.2389 | 48.4226 | 99.9495 | 85.6968 | 1980 | 2109 | 1980 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | * | 95.3846 | 96.8750 | 93.9394 | 94.4162 | 31 | 1 | 31 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 94.3005 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |