PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65551-65600 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0794 | 48.2353 | 100.0000 | 84.9265 | 41 | 44 | 41 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m0_e0 | * | 94.2458 | 98.4436 | 90.3915 | 94.6603 | 506 | 8 | 508 | 54 | 4 | 7.4074 | |
| ckim-gatk | INDEL | * | map_l150_m0_e0 | het | 92.1979 | 98.2405 | 86.8557 | 95.3544 | 335 | 6 | 337 | 51 | 1 | 1.9608 | |
| ckim-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.4286 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.7879 | 99.3902 | 98.1928 | 91.6917 | 163 | 1 | 163 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | * | 97.7354 | 98.2271 | 97.2486 | 82.2976 | 4100 | 74 | 4100 | 116 | 14 | 12.0690 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | het | 97.0162 | 97.7840 | 96.2604 | 84.6993 | 2780 | 63 | 2780 | 108 | 8 | 7.4074 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.5455 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m0_e0 | homalt | 99.2838 | 99.1717 | 99.3962 | 72.8817 | 1317 | 11 | 1317 | 8 | 6 | 75.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5957 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9394 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | * | map_l150_m0_e0 | * | 97.7617 | 98.3627 | 97.1680 | 81.2391 | 11835 | 197 | 11837 | 345 | 42 | 12.1739 | |
| ckim-dragen | SNP | * | map_l150_m0_e0 | het | 96.9776 | 97.9975 | 95.9788 | 84.1657 | 7781 | 159 | 7781 | 326 | 26 | 7.9755 | |
| ckim-dragen | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.5455 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m0_e0 | homalt | 99.3015 | 99.0707 | 99.5334 | 70.2317 | 4051 | 38 | 4053 | 19 | 16 | 84.2105 | |
| ckim-dragen | SNP | ti | map_l150_m0_e0 | * | 97.7765 | 98.4353 | 97.1264 | 80.6352 | 7738 | 123 | 7740 | 229 | 28 | 12.2271 | |
| ckim-dragen | SNP | ti | map_l150_m0_e0 | het | 96.9562 | 98.1165 | 95.8230 | 83.8541 | 5001 | 96 | 5001 | 218 | 18 | 8.2569 | |
| ckim-dragen | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m0_e0 | homalt | 99.3100 | 99.0221 | 99.5996 | 68.7592 | 2734 | 27 | 2736 | 11 | 10 | 90.9091 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 94.8440 | 94.3182 | 95.3757 | 91.3802 | 166 | 10 | 165 | 8 | 2 | 25.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 93.4271 | 93.3962 | 93.4579 | 92.5952 | 99 | 7 | 100 | 7 | 1 | 14.2857 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 97.7444 | 97.0149 | 98.4848 | 88.2562 | 65 | 2 | 65 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | * | map_l150_m0_e0 | * | 95.8209 | 95.5951 | 96.0478 | 81.9455 | 11502 | 530 | 11495 | 473 | 120 | 25.3700 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | het | 94.9871 | 95.8312 | 94.1577 | 84.6817 | 7609 | 331 | 7607 | 472 | 119 | 25.2119 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l150_m0_e0 | homalt | 97.4937 | 95.1333 | 99.9743 | 71.2925 | 3890 | 199 | 3888 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 90.9091 | 100.0000 | 83.3333 | 97.3094 | 4 | 0 | 5 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 96.1538 | 2 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.9247 | 1 | 0 | 1 | 0 | 0 | ||