PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65501-65550 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | map_l150_m0_e0 | * | 76.8096 | 72.5099 | 81.6514 | 84.8420 | 5700 | 2161 | 5696 | 1280 | 329 | 25.7031 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | het | 72.0997 | 66.3920 | 78.8811 | 87.9805 | 3384 | 1713 | 3384 | 906 | 29 | 3.2009 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | homalt | 84.9597 | 83.8464 | 86.1028 | 73.9645 | 2315 | 446 | 2311 | 373 | 299 | 80.1609 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | * | 96.1418 | 97.0817 | 95.2199 | 92.6863 | 499 | 15 | 498 | 25 | 4 | 16.0000 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | het | 95.2381 | 96.7742 | 93.7500 | 93.2991 | 330 | 11 | 330 | 22 | 1 | 4.5455 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m0_e0 | homalt | 98.1651 | 98.1707 | 98.1595 | 90.6697 | 161 | 3 | 160 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 51.7241 | 45.4545 | 60.0000 | 94.3966 | 80 | 96 | 78 | 52 | 39 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 59.3607 | 61.3208 | 57.5221 | 94.3500 | 65 | 41 | 65 | 48 | 38 | 79.1667 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 34.6359 | 22.3881 | 76.4706 | 94.6875 | 15 | 52 | 13 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | tv | map_l150_m0_e0 | * | 72.3723 | 66.6267 | 79.2023 | 86.0382 | 2781 | 1393 | 2780 | 730 | 179 | 24.5205 | |
| ciseli-custom | SNP | tv | map_l150_m0_e0 | het | 67.3971 | 60.2533 | 76.4627 | 88.5079 | 1713 | 1130 | 1712 | 527 | 18 | 3.4156 | |
| ciseli-custom | SNP | tv | map_l150_m0_e0 | hetalt | 33.3333 | 33.3333 | 33.3333 | 90.9091 | 1 | 2 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | map_l150_m0_e0 | homalt | 82.2034 | 80.3464 | 84.1483 | 77.4538 | 1067 | 261 | 1067 | 201 | 160 | 79.6020 | |
| ckim-isaac | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | SNP | tv | map_l150_m0_e0 | * | 71.0339 | 56.1092 | 96.7755 | 93.2891 | 2342 | 1832 | 2341 | 78 | 7 | 8.9744 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | het | 74.0126 | 60.3588 | 95.6497 | 94.2325 | 1716 | 1127 | 1715 | 78 | 7 | 8.9744 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7952 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m0_e0 | homalt | 64.0041 | 47.0633 | 100.0000 | 87.1795 | 625 | 703 | 625 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | * | 39.0244 | 25.0000 | 88.8889 | 96.4567 | 8 | 24 | 8 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | het | 25.0000 | 15.0000 | 75.0000 | 97.9695 | 3 | 17 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.6667 | 3 | 2 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 90.4762 | 2 | 5 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | map_l150_m0_e0 | * | 72.7717 | 57.9767 | 97.7049 | 93.3158 | 298 | 216 | 298 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | het | 76.2961 | 62.7566 | 97.2851 | 94.2982 | 214 | 127 | 215 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.9925 | 5 | 4 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l150_m0_e0 | homalt | 64.7541 | 48.1707 | 98.7500 | 85.5596 | 79 | 85 | 79 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 98.5507 | 0 | 7 | 0 | 1 | 0 | 0.0000 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 98.1818 | 0 | 7 | 0 | 1 | 0 | 0.0000 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | * | 74.2489 | 59.8616 | 97.7401 | 92.7340 | 173 | 116 | 173 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | het | 77.7518 | 64.8515 | 97.0588 | 93.4772 | 131 | 71 | 132 | 4 | 1 | 25.0000 | |