PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65451-65500 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.1818 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | homalt | 49.9321 | 33.2850 | 99.8913 | 89.4326 | 919 | 1842 | 919 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | * | 60.8696 | 43.7500 | 100.0000 | 97.6617 | 77 | 99 | 77 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | het | 64.9682 | 48.1132 | 100.0000 | 97.9260 | 51 | 55 | 51 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | homalt | 55.9140 | 38.8060 | 100.0000 | 96.0606 | 26 | 41 | 26 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.8718 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.1429 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | * | 92.3077 | 85.7143 | 100.0000 | 93.2584 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | het | 92.3077 | 85.7143 | 100.0000 | 87.7551 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | * | 96.7298 | 97.2318 | 96.2329 | 91.2470 | 281 | 8 | 281 | 11 | 1 | 9.0909 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | het | 95.8231 | 96.5347 | 95.1220 | 90.2334 | 195 | 7 | 195 | 10 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 92.7039 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | * | 98.2636 | 98.0635 | 98.4645 | 81.5621 | 11799 | 233 | 11799 | 184 | 58 | 31.5217 | |
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | het | 97.7971 | 97.8463 | 97.7479 | 82.8433 | 7769 | 171 | 7769 | 179 | 54 | 30.1676 | |
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | homalt | 99.1750 | 98.4837 | 99.8760 | 78.3354 | 4027 | 62 | 4027 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 91.6584 | 167 | 9 | 166 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | het | 95.0980 | 91.5094 | 98.9796 | 92.1222 | 97 | 9 | 97 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0149 | 3 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 90.3272 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | * | 93.9335 | 93.7500 | 94.1176 | 92.9752 | 30 | 2 | 32 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | het | 95.6438 | 95.0000 | 96.2963 | 89.8496 | 19 | 1 | 26 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 5 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 96.6019 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 94.1176 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | * | 98.4686 | 98.1555 | 98.7838 | 81.2749 | 7716 | 145 | 7716 | 95 | 36 | 37.8947 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | het | 98.0450 | 97.9007 | 98.1897 | 82.8404 | 4990 | 107 | 4990 | 92 | 34 | 36.9565 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | homalt | 99.2528 | 98.6237 | 99.8899 | 77.4057 | 2723 | 38 | 2723 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 97.6744 | 2 | 6 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 96.9231 | 2 | 2 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | map_l150_m0_e0 | * | 75.3031 | 70.4787 | 80.8364 | 85.2202 | 8480 | 3552 | 8466 | 2007 | 507 | 25.2616 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | het | 70.4472 | 64.1940 | 78.0503 | 88.1313 | 5097 | 2843 | 5092 | 1432 | 47 | 3.2821 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | hetalt | 33.3333 | 33.3333 | 33.3333 | 90.9091 | 1 | 2 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | homalt | 84.0715 | 82.7097 | 85.4790 | 75.1182 | 3382 | 707 | 3373 | 573 | 459 | 80.1047 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 55.1724 | 50.0000 | 61.5385 | 96.2590 | 16 | 16 | 16 | 10 | 3 | 30.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 70.5882 | 85.7143 | 60.0000 | 94.7368 | 6 | 1 | 6 | 4 | 3 | 75.0000 | |