PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65051-65100 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 95.2978 | 92.6829 | 98.0645 | 90.6514 | 152 | 12 | 152 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | SNP | ti | map_l150_m0_e0 | * | 98.8419 | 98.8169 | 98.8670 | 81.9794 | 7768 | 93 | 7766 | 89 | 19 | 21.3483 | |
| dgrover-gatk | SNP | ti | map_l150_m0_e0 | het | 98.5705 | 98.7836 | 98.3584 | 84.6267 | 5035 | 62 | 5033 | 84 | 15 | 17.8571 | |
| dgrover-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l150_m0_e0 | homalt | 99.3450 | 98.8772 | 99.8172 | 73.4053 | 2730 | 31 | 2730 | 5 | 4 | 80.0000 | |
| dgrover-gatk | SNP | tv | map_l150_m0_e0 | * | 98.5887 | 98.7542 | 98.4237 | 82.7837 | 4122 | 52 | 4121 | 66 | 10 | 15.1515 | |
| dgrover-gatk | SNP | tv | map_l150_m0_e0 | het | 98.2667 | 98.7337 | 97.8041 | 84.8097 | 2807 | 36 | 2806 | 63 | 8 | 12.6984 | |
| dgrover-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l150_m0_e0 | homalt | 99.2811 | 98.7952 | 99.7719 | 75.6572 | 1312 | 16 | 1312 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4236 | 97.9239 | 96.9283 | 92.3837 | 283 | 6 | 284 | 9 | 1 | 11.1111 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0684 | 98.0198 | 96.1353 | 92.6648 | 198 | 4 | 199 | 8 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.8795 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.2332 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.6048 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 96.0000 | 3 | 1 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7192 | 97.1591 | 98.2857 | 92.7023 | 171 | 5 | 172 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 97.1200 | 95.2830 | 99.0291 | 93.8544 | 101 | 5 | 102 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3415 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 89.2188 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 98.4127 | 96.8750 | 100.0000 | 95.1104 | 31 | 1 | 31 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.5056 | 20 | 0 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3846 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.6204 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.7612 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 97.6744 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.5075 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | map_l150_m0_e0 | * | 98.7537 | 98.7949 | 98.7125 | 82.2666 | 11887 | 145 | 11884 | 155 | 29 | 18.7097 | |
| dgrover-gatk | SNP | * | map_l150_m0_e0 | het | 98.4616 | 98.7657 | 98.1593 | 84.6929 | 7842 | 98 | 7839 | 147 | 23 | 15.6463 | |
| dgrover-gatk | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l150_m0_e0 | homalt | 99.3242 | 98.8506 | 99.8025 | 74.1808 | 4042 | 47 | 4042 | 8 | 6 | 75.0000 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | * | 70.8651 | 54.9676 | 99.7000 | 80.5441 | 4321 | 3540 | 4321 | 13 | 3 | 23.0769 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | het | 74.1407 | 59.0347 | 99.6358 | 83.5333 | 3009 | 2088 | 3009 | 11 | 1 | 9.0909 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | ti | map_l150_m0_e0 | homalt | 64.3926 | 47.5190 | 99.8478 | 66.4710 | 1312 | 1449 | 1312 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | map_l150_m0_e0 | * | 69.2458 | 53.0336 | 99.7343 | 81.0939 | 6381 | 5651 | 6381 | 17 | 4 | 23.5294 | |
| ckim-isaac | SNP | * | map_l150_m0_e0 | het | 72.5569 | 57.0403 | 99.6699 | 83.7697 | 4529 | 3411 | 4529 | 15 | 2 | 13.3333 | |
| ckim-isaac | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | map_l150_m0_e0 | homalt | 62.3254 | 45.2922 | 99.8921 | 68.1060 | 1852 | 2237 | 1852 | 2 | 2 | 100.0000 | |