PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65001-65050 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 84.0000 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | het | 50.0000 | 50.0000 | 50.0000 | 85.7143 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 81.8182 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | * | 40.0000 | 57.1429 | 30.7692 | 93.1937 | 4 | 3 | 4 | 9 | 2 | 22.2222 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | het | 53.3333 | 57.1429 | 50.0000 | 91.0112 | 4 | 3 | 4 | 4 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 95.8763 | 0 | 0 | 0 | 4 | 2 | 50.0000 | ||
| mlin-fermikit | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | * | 39.8551 | 31.2500 | 55.0000 | 90.0498 | 10 | 22 | 11 | 9 | 5 | 55.5556 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | het | 38.5321 | 30.0000 | 53.8462 | 85.7143 | 6 | 14 | 7 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 28.5714 | 20.0000 | 50.0000 | 77.7778 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 95.0495 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 94.4444 | 94.1176 | 94.7735 | 91.6932 | 272 | 17 | 272 | 15 | 6 | 40.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | het | 94.3489 | 95.0495 | 93.6585 | 92.6126 | 192 | 10 | 192 | 13 | 5 | 38.4615 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | homalt | 95.8084 | 94.1176 | 97.5610 | 87.9412 | 80 | 5 | 80 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | * | 79.3651 | 78.1250 | 80.6452 | 93.7120 | 25 | 7 | 25 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | het | 84.4444 | 95.0000 | 76.0000 | 93.9904 | 19 | 1 | 19 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.2078 | 6 | 1 | 6 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 99.3665 | 7 | 0 | 7 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.9231 | 7 | 0 | 7 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | * | 71.1604 | 56.3967 | 96.3949 | 93.3607 | 2354 | 1820 | 2353 | 88 | 6 | 6.8182 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | het | 74.0589 | 60.6050 | 95.1907 | 94.3590 | 1723 | 1120 | 1722 | 87 | 5 | 5.7471 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.0476 | 1 | 2 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | homalt | 64.3185 | 47.4398 | 99.8415 | 86.2587 | 630 | 698 | 630 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | * | 92.9134 | 91.8288 | 94.0239 | 93.2052 | 472 | 42 | 472 | 30 | 20 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | het | 93.0233 | 93.8416 | 92.2190 | 93.9442 | 320 | 21 | 320 | 27 | 18 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||