PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64901-64950 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3835 | 96.9938 | 99.8136 | 78.2964 | 2678 | 83 | 2678 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | * | 95.1094 | 95.2803 | 94.9391 | 85.9113 | 3977 | 197 | 3977 | 212 | 55 | 25.9434 | |
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | het | 93.9990 | 95.0405 | 92.9800 | 87.0071 | 2702 | 141 | 2702 | 204 | 53 | 25.9804 | |
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | homalt | 97.6637 | 96.0090 | 99.3765 | 82.5845 | 1275 | 53 | 1275 | 8 | 2 | 25.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | * | 94.7674 | 92.6136 | 97.0238 | 92.2616 | 163 | 13 | 163 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | het | 94.7368 | 93.3962 | 96.1165 | 94.1344 | 99 | 7 | 99 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | homalt | 96.9697 | 95.5224 | 98.4615 | 84.3373 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 84.0000 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 80.9524 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | * | 95.2820 | 92.2179 | 98.5567 | 87.0112 | 474 | 40 | 478 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | het | 93.3791 | 88.8563 | 98.3871 | 82.7873 | 303 | 38 | 305 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 96.5278 | 8 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | homalt | 99.0881 | 99.3902 | 98.7879 | 89.8148 | 163 | 1 | 163 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 46.1538 | 37.5000 | 60.0000 | 96.4029 | 3 | 5 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m0_e0 | het | 28.5714 | 25.0000 | 33.3333 | 97.3214 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5926 | 2 | 2 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m0_e0 | * | 72.2268 | 57.5050 | 97.0803 | 92.6384 | 6919 | 5113 | 6916 | 208 | 23 | 11.0577 | |
| jmaeng-gatk | SNP | * | map_l150_m0_e0 | het | 75.3760 | 62.0529 | 95.9844 | 93.8640 | 4927 | 3013 | 4924 | 206 | 21 | 10.1942 | |
| jmaeng-gatk | SNP | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.0476 | 1 | 2 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m0_e0 | homalt | 65.4719 | 48.6916 | 99.8996 | 84.7432 | 1991 | 2098 | 1991 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | * | 72.7820 | 58.0842 | 97.4381 | 92.2027 | 4566 | 3295 | 4564 | 120 | 17 | 14.1667 | |
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | het | 76.1038 | 62.8605 | 96.4167 | 93.5560 | 3204 | 1893 | 3202 | 119 | 16 | 13.4454 | |
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.4615 | 1 | 2 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | homalt | 66.0199 | 49.2937 | 99.9266 | 83.9216 | 1361 | 1400 | 1361 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 97.5232 | 6 | 2 | 6 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 75.0000 | 60.0000 | 97.9167 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.6522 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.6623 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.1154 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 94.0364 | 97.9239 | 90.4459 | 94.1809 | 283 | 6 | 284 | 30 | 1 | 3.3333 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 92.5894 | 98.5149 | 87.3362 | 94.7966 | 199 | 3 | 200 | 29 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.1453 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.4328 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.2079 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 98.1707 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0826 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 96.0815 | 97.1591 | 95.0276 | 94.8594 | 171 | 5 | 172 | 9 | 2 | 22.2222 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 96.1457 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |