PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64751-64800 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | homalt | 95.9415 | 93.1525 | 98.9026 | 83.4356 | 721 | 53 | 721 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | * | 94.5581 | 93.8634 | 95.2632 | 87.2725 | 1086 | 71 | 1086 | 54 | 28 | 51.8519 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | het | 94.7368 | 95.8442 | 93.6548 | 88.7251 | 738 | 32 | 738 | 50 | 27 | 54.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | homalt | 96.1326 | 93.5484 | 98.8636 | 82.1138 | 348 | 24 | 348 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | * | 99.1279 | 98.4852 | 99.7790 | 64.7783 | 46487 | 715 | 46495 | 103 | 28 | 27.1845 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | het | 98.7345 | 97.7868 | 99.7007 | 62.3395 | 28984 | 656 | 28985 | 87 | 12 | 13.7931 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | homalt | 99.7859 | 99.6635 | 99.9086 | 68.1960 | 17473 | 59 | 17480 | 16 | 16 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | * | 99.1333 | 98.5291 | 99.7448 | 64.3814 | 16412 | 245 | 16417 | 42 | 9 | 21.4286 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | het | 98.7185 | 97.8205 | 99.6332 | 61.5213 | 10323 | 230 | 10322 | 38 | 5 | 13.1579 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | homalt | 99.8435 | 99.7530 | 99.9341 | 68.3791 | 6059 | 15 | 6065 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | * | 97.7940 | 96.5393 | 99.0817 | 82.5509 | 2148 | 77 | 2158 | 20 | 1 | 5.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | het | 97.3719 | 95.9517 | 98.8347 | 81.0855 | 1351 | 57 | 1357 | 16 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 95.5982 | 37 | 6 | 39 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | homalt | 98.8303 | 98.1912 | 99.4778 | 81.6483 | 760 | 14 | 762 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | * | 99.1256 | 98.4625 | 99.7978 | 64.9540 | 30099 | 470 | 30102 | 61 | 19 | 31.1475 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | het | 98.7433 | 97.7681 | 99.7381 | 62.7777 | 18661 | 426 | 18663 | 49 | 7 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 24 | 0 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | homalt | 99.7553 | 99.6160 | 99.8950 | 68.0185 | 11414 | 44 | 11415 | 12 | 12 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 97.5221 | 0 | 0 | 14 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 97.1429 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.2301 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.6744 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 92.5212 | 89.2857 | 96.0000 | 89.9194 | 25 | 3 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 94.8682 | 95.0000 | 94.7368 | 89.3258 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.1111 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 97.4684 | 0 | 0 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.8000 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.8947 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0769 | 0 | 0 | 4 | 0 | 0 | ||