PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64701-64750 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | * | 53.8462 | 46.6667 | 63.6364 | 91.7293 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | het | 62.5000 | 55.5556 | 71.4286 | 89.8551 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 57.1429 | 66.6667 | 50.0000 | 92.7273 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | * | 55.2632 | 75.0000 | 43.7500 | 93.7662 | 21 | 7 | 21 | 27 | 3 | 11.1111 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | het | 65.1163 | 70.0000 | 60.8696 | 93.5754 | 14 | 6 | 14 | 9 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 75.0000 | 75.0000 | 75.0000 | 80.9524 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 32.0000 | 100.0000 | 19.0476 | 94.6292 | 4 | 0 | 4 | 17 | 3 | 17.6471 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | * | 69.4080 | 58.1573 | 86.0558 | 82.7274 | 1294 | 931 | 1296 | 210 | 161 | 76.6667 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | het | 67.5834 | 52.5568 | 94.6429 | 82.8559 | 740 | 668 | 742 | 42 | 17 | 40.4762 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | hetalt | 74.2857 | 60.4651 | 96.2963 | 89.4531 | 26 | 17 | 26 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | homalt | 71.8856 | 68.2171 | 75.9712 | 82.1337 | 528 | 246 | 528 | 167 | 144 | 86.2275 | |
| mlin-fermikit | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | * | 75.8724 | 69.5312 | 83.4862 | 85.1499 | 89 | 39 | 91 | 18 | 12 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | het | 73.6724 | 66.1972 | 83.0508 | 83.7912 | 47 | 24 | 49 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 76.4706 | 65.0000 | 92.8571 | 75.0000 | 13 | 7 | 13 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | homalt | 79.4521 | 78.3784 | 80.5556 | 88.5350 | 29 | 8 | 29 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | * | 70.7275 | 59.6370 | 86.8852 | 80.8130 | 690 | 467 | 689 | 104 | 91 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | het | 68.8482 | 53.2468 | 97.3810 | 81.0640 | 410 | 360 | 409 | 11 | 4 | 36.3636 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.0233 | 9 | 6 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | homalt | 73.6413 | 72.8495 | 74.4505 | 79.6193 | 271 | 101 | 271 | 93 | 87 | 93.5484 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.7692 | 75.0000 | 87.5000 | 98.3146 | 21 | 7 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | het | 87.8049 | 90.0000 | 85.7143 | 97.6923 | 18 | 2 | 18 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4163 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | * | 84.0047 | 74.0950 | 96.9745 | 86.2788 | 12342 | 4315 | 12340 | 385 | 14 | 3.6364 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | het | 87.8827 | 81.2376 | 95.7119 | 88.2796 | 8573 | 1980 | 8571 | 384 | 13 | 3.3854 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 77.5510 | 63.3333 | 100.0000 | 93.0909 | 19 | 11 | 19 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | homalt | 76.3359 | 61.7386 | 99.9733 | 76.6438 | 3750 | 2324 | 3750 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | * | 77.3663 | 73.4375 | 81.7391 | 90.2294 | 94 | 34 | 94 | 21 | 20 | 95.2381 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 82.8025 | 91.5493 | 75.5814 | 91.2779 | 65 | 6 | 65 | 21 | 20 | 95.2381 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | homalt | 87.8788 | 78.3784 | 100.0000 | 84.8168 | 29 | 8 | 29 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | * | 92.9861 | 91.4607 | 94.5632 | 88.4195 | 2035 | 190 | 2035 | 117 | 81 | 69.2308 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | het | 92.8294 | 93.3239 | 92.3401 | 89.9662 | 1314 | 94 | 1314 | 109 | 76 | 69.7248 | |