PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64351-64400 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | * | 60.1890 | 64.1509 | 56.6879 | 82.9162 | 34 | 19 | 89 | 68 | 53 | 77.9412 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | het | 66.1017 | 86.6667 | 53.4247 | 82.9240 | 26 | 4 | 78 | 68 | 53 | 77.9412 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 4 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | homalt | 42.1053 | 26.6667 | 100.0000 | 82.8125 | 4 | 11 | 11 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | map_l125_m2_e1 | het | 91.7986 | 96.5945 | 87.4564 | 82.3224 | 18437 | 650 | 18295 | 2624 | 207 | 7.8887 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l125_m2_e1 | homalt | 97.8366 | 95.9679 | 99.7796 | 68.5265 | 10996 | 462 | 10863 | 24 | 19 | 79.1667 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | * | 93.1692 | 96.8962 | 89.7183 | 79.8287 | 16140 | 517 | 16082 | 1843 | 125 | 6.7824 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | het | 90.7385 | 97.4983 | 84.8553 | 82.7554 | 10289 | 264 | 10259 | 1831 | 116 | 6.3353 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | homalt | 98.0309 | 96.3286 | 99.7943 | 68.8883 | 5851 | 223 | 5823 | 12 | 9 | 75.0000 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | * | 91.8033 | 94.3820 | 89.3617 | 94.1271 | 2100 | 125 | 2100 | 250 | 82 | 32.8000 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | het | 91.2339 | 97.9403 | 85.3870 | 92.0826 | 1379 | 29 | 1379 | 236 | 77 | 32.6271 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | homalt | 95.5600 | 93.1525 | 98.0952 | 83.9590 | 721 | 53 | 721 | 14 | 5 | 35.7143 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | * | 93.7321 | 96.5489 | 91.0750 | 79.3697 | 45573 | 1629 | 44971 | 4407 | 338 | 7.6696 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | het | 91.4989 | 96.9163 | 86.6551 | 82.4293 | 28726 | 914 | 28383 | 4371 | 310 | 7.0922 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | homalt | 97.9034 | 96.0929 | 99.7834 | 68.5949 | 16847 | 685 | 16588 | 36 | 28 | 77.7778 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e1 | * | 93.9227 | 96.2838 | 91.6745 | 79.2018 | 29433 | 1136 | 29158 | 2648 | 226 | 8.5347 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | * | 98.0600 | 97.6180 | 98.5061 | 98.7184 | 2172 | 53 | 2176 | 33 | 14 | 42.4242 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | het | 97.6418 | 96.9460 | 98.3477 | 87.0294 | 1365 | 43 | 1369 | 23 | 8 | 34.7826 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 94.1411 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | homalt | 99.0304 | 98.9664 | 99.0944 | 86.2407 | 766 | 8 | 766 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | * | 98.1563 | 97.8161 | 98.4988 | 85.2244 | 851 | 19 | 853 | 13 | 1 | 7.6923 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | het | 97.5364 | 97.2441 | 97.8304 | 85.6618 | 494 | 14 | 496 | 11 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.1397 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1228 | 98.8338 | 99.4135 | 83.7309 | 339 | 4 | 339 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | * | 99.2171 | 99.2976 | 99.1368 | 71.9418 | 16540 | 117 | 16538 | 144 | 4 | 2.7778 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | het | 98.8982 | 99.0998 | 98.6974 | 74.5288 | 10458 | 95 | 10456 | 138 | 1 | 0.7246 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.5490 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6707 | 99.9010 | 65.8803 | 6054 | 20 | 6054 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | * | 99.1573 | 99.2225 | 99.0922 | 71.3931 | 46835 | 367 | 46829 | 429 | 15 | 3.4965 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | het | 98.7960 | 98.9845 | 98.6083 | 74.0672 | 29339 | 301 | 29333 | 414 | 4 | 0.9662 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.5490 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | homalt | 99.7744 | 99.6350 | 99.9142 | 65.3032 | 17468 | 64 | 17468 | 15 | 11 | 73.3333 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | * | 99.1254 | 99.1822 | 99.0686 | 71.0811 | 30319 | 250 | 30315 | 285 | 11 | 3.8597 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | het | 98.7395 | 98.9207 | 98.5590 | 73.8046 | 18881 | 206 | 18877 | 276 | 3 | 1.0870 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.7143 | 24 | 0 | 24 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7684 | 99.6160 | 99.9212 | 64.9891 | 11414 | 44 | 11414 | 9 | 8 | 88.8889 | |
| rpoplin-dv42 | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||